Pairwise Alignments

Query, 512 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 312 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  118 bits (295), Expect = 3e-31
 Identities = 67/163 (41%), Positives = 99/163 (60%), Gaps = 7/163 (4%)

Query: 354 EDMAVRDKLTGAYNRQVFEELVDDAISLANKESHPLSLAVIDLDHFKQVNDNYGHPAGDL 413
           E  +  D LTG  NR+  E+++  A++ +++    L + + D+D FK +NDN+GH  GD 
Sbjct: 149 ERQSKTDLLTGLANRRQIEDVLAAAMAKSDRTQSSLCVVMCDIDFFKNINDNFGHLCGDD 208

Query: 414 VLQRVVALCQRHIAQVGT-LCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIA-----MHA 467
           VL ++VA   +H AQ  T + RWGGEEF+++L H+  + A    E +R  IA      + 
Sbjct: 209 VL-KIVASQLQHSAQAATCIARWGGEEFLIVLEHVVPESAGVLCEQLRGLIAATDYQSYG 267

Query: 468 SQPQVTVSIGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVV 510
              Q+T+S G VQYQ NESL  L  R D+A+Y AK+ GRN+VV
Sbjct: 268 QHMQLTMSFGCVQYQANESLQSLLCRVDKALYQAKNGGRNQVV 310