Pairwise Alignments

Query, 512 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 319 a.a., GGDEF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  114 bits (285), Expect = 5e-30
 Identities = 68/186 (36%), Positives = 101/186 (54%), Gaps = 9/186 (4%)

Query: 335 ALGVLGLAQMSFRGYQKRLEDMAVRDKLTGAYNRQVFEELVDDAISLANKESHPLSLAVI 394
           +L  +G    + +   + L   A+ D+LT  +NR+ +E  + D I  A ++    SL +I
Sbjct: 134 SLNAMGQEVQNLKTEMENLSLAAMTDQLTSLHNRRAYEIAIQDHIHRAEEQHTRCSLLLI 193

Query: 395 DLDHFKQVNDNYGHPAGDLVLQRVVALCQRHIAQVGTLCRWGGEEFVVLLPHMTQQEAYQ 454
           D+D FK  ND YGH  GD VL  V    ++ +     + R+GGEEFVVLLP+    +A Q
Sbjct: 194 DIDRFKVFNDTYGHQVGDKVLAYVALALKQCVRGDDFVARYGGEEFVVLLPNTHFHDALQ 253

Query: 455 RMESIRAEIA---------MHASQPQVTVSIGVVQYQQNESLLHLFNRADQAMYTAKSEG 505
             E++R  I+            S   +TVSIG+   Q+ +    LF+RAD+A+Y AKS+G
Sbjct: 254 VAETLRGRISERRLAIGKDKKLSLGAITVSIGLASLQKGDDAETLFSRADKALYEAKSDG 313

Query: 506 RNKVVG 511
           RN V G
Sbjct: 314 RNCVRG 319