Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 411 a.a., Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) from Pseudomonas fluorescens FW300-N2E2

 Score =  123 bits (309), Expect = 7e-33
 Identities = 101/335 (30%), Positives = 155/335 (46%), Gaps = 37/335 (11%)

Query: 16  PTEKRLNKFISETGYCSRREADKLIEQGRVTLNGLQPEVGSKVTEQDEVCIDGKPLRSKE 75
           P  ++L K ++  G  SRR+ +  I QGR+ +NG    +G +V   D + IDGK ++ +E
Sbjct: 14  PAGEKLQKVLARIGVGSRRDVEAWITQGRIKVNGKDAILGLRVDMHDAITIDGKVIKREE 73

Query: 76  RPI----YIALNKPTGITCTTERDVPGN---IVDFIGHHK--RIFPIGRLDKPSDGLIFL 126
                   I  NKP G  CT  RD P     + D +   K  R   IGRLD  + GL+  
Sbjct: 74  AAETVRRVIMYNKPDGEICT--RDDPEGRPTVFDKMPRPKEGRWINIGRLDINTTGLLMF 131

Query: 127 TNDGDIVNKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILDTVTLPCKVTQETQ-- 184
           T DG++ N+++      ++EY VRV   +  E I ++ +GV + D    P + T   Q  
Sbjct: 132 TTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIERLKAGVVLEDG---PARFTDIKQAP 188

Query: 185 ------YSFRIVLTQGLNRQIRRMCEALGYEVFKLRRVRIMNITLDG-IPNGKWRYLSEA 237
                 + +  V+ +G NR++RR+ E+ G  V +L+RVR   + L+  +P G+WR +S+ 
Sbjct: 189 GGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLKRVRFGPVFLNSDLPMGRWREMSQY 248

Query: 238 EVSEILAMCEDSSGTEEASRVAQSGDTIKRATDAKLFDSREANKESKARRNPKTYHGKNA 297
           EV +ILA              A+S D ++R    +   SR   K  + R       G   
Sbjct: 249 EV-DILAAEVGLKPVAMPQMTAKSKDKLER---MQRKSSRPMGKTERVRTLRPAAEG--- 301

Query: 298 QEFRHAPNSKKAQRRPSSPSSNTASGSKPTPRTGG 332
                AP   +  R P       A   KP PR  G
Sbjct: 302 -----APTGPRPSREPQIEGERPA--RKPAPRQDG 329