Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 377 a.a., pseudouridine synthase from Pseudomonas stutzeri RCH2

 Score =  116 bits (291), Expect = 8e-31
 Identities = 78/239 (32%), Positives = 128/239 (53%), Gaps = 23/239 (9%)

Query: 19  KRLNKFISETGYCSRREADKLIEQGRVTLNGLQPEVGSKVTEQDEVCIDGKPLRSKE--- 75
           ++L K ++  G  SRR+ +K I +GRV +NG    +G +V   D + +DG+ L+ +E   
Sbjct: 15  EKLQKVLARLGMASRRDVEKWIVEGRVKVNGAVASLGQRVDSHDAIAVDGRLLKREEANE 74

Query: 76  --RPIYIALNKPTGITCTTERDVPG--NIVDFIGHHK--RIFPIGRLDKPSDGLIFLTND 129
             R + I  NKP G  C T  D  G   + D +   K  R   IGRLD  + GL+  T D
Sbjct: 75  VVRRVLI-YNKPDGEIC-TRNDPEGRPTVFDRLPRPKEGRWINIGRLDINTTGLLLFTTD 132

Query: 130 GDIVNKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILDTVTLPCKVT--QET---- 183
           G++ N+++      ++EY VRV   +  E I ++ +GV + D    P + T  QE     
Sbjct: 133 GELANRLMHPSYEMDREYAVRVRGEVDDEMIERLKTGVMLEDG---PARFTDIQEAPGGE 189

Query: 184 --QYSFRIVLTQGLNRQIRRMCEALGYEVFKLRRVRIMNITL-DGIPNGKWRYLSEAEV 239
              + +  V+ +G NR++RR+ E+ G  V +L+RVR   + +   +P G+WR +S++EV
Sbjct: 190 GFNHWYHCVVMEGRNREVRRLWESQGLVVSRLKRVRFGPVFMTSDLPMGRWREMSQSEV 248