Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 243 a.a., ribosomal large subunit pseudouridine synthase B from Synechococcus elongatus PCC 7942

 Score =  132 bits (333), Expect = 7e-36
 Identities = 87/240 (36%), Positives = 132/240 (55%), Gaps = 12/240 (5%)

Query: 19  KRLNKFISETGYCSRREADKLIEQGRVTLNGLQPEVGSKVT-EQDEVCIDGKPLRSKERP 77
           +RL K +S+ G  SRR+A++ I+QGRVT+NG   E+G +   ++D + +DGK LR K RP
Sbjct: 3   ERLQKILSQLGVASRRQAEQWIQQGRVTINGRVAEIGQQADLKRDRIHLDGKRLRPKHRP 62

Query: 78  I--YIALNKPTGITCTTERDVPGN--IVDFIGHHKR--IFPIGRLDKPSDGLIFLTNDGD 131
              Y+ L+KP G+  T  RD      ++D +    R  + P+GRLD  S GL+ L NDG+
Sbjct: 63  EARYLLLHKPVGVVSTC-RDPQRRRTVIDLVDPEFRPGLHPVGRLDTDSSGLLLLCNDGE 121

Query: 132 IVNKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILDTVTLPCKVT----QETQYSF 187
           +  +I     + EK Y V V+       +    SGV + D  TLP  V     +      
Sbjct: 122 LTYQISHPRFHIEKTYRVWVEGHPPASVLEHWRSGVWLDDYQTLPAGVRILHDRAESTLL 181

Query: 188 RIVLTQGLNRQIRRMCEALGYEVFKLRRVRIMNITLDGIPNGKWRYLSEAEVSEILAMCE 247
            ++L +G NRQIRR+ E LG+ V +L RV I  + L  +  G++R L+ AEV  +  + +
Sbjct: 182 EVILHEGRNRQIRRVAEQLGHPVLRLTRVAIGPLRLGSLQPGEYRSLTAAEVYRLRQLAQ 241