Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 320 a.a., ribosomal large subunit pseudouridine synthase B from Sinorhizobium meliloti 1021

 Score =  110 bits (274), Expect = 6e-29
 Identities = 78/234 (33%), Positives = 119/234 (50%), Gaps = 24/234 (10%)

Query: 21  LNKFISETGYCSRREADKLIEQGRVTLNGLQPEVGSKVT--------EQDEVCIDGKPLR 72
           L + +S+ GYCSR +A+KLI +GRV++       G K+T        E D + +DG  + 
Sbjct: 85  LARALSKLGYCSRTQAEKLIAEGRVSV------AGRKITDLSHWVDIEADRIAVDGTVIA 138

Query: 73  SKERPIYIALNKPTGITCTTERDVPGNIVDFIGHHK----RIFPIGRLDKPSDGLIFLTN 128
           ++ R +Y+ LNKP G+  TT  D  G    F          + P+GRLDK S+GL+  TN
Sbjct: 139 AQAR-VYLMLNKPRGLV-TTRDDPEGRPTVFSCLDNVDVPSLSPVGRLDKASEGLLLFTN 196

Query: 129 DGDIVNKILRAGNNHEKEYVVRV----DKPITPEFIRQMSSGVNILDTVTLPCKVTQETQ 184
           D  +  ++L    +  K Y V+V     + +    +  ++ G  +L  + +      +  
Sbjct: 197 DTVLAQRLLDPETHLGKVYHVQVRGIFGEAMAARMVEGVTEGGELLRALRVERLKGGDRN 256

Query: 185 YSFRIVLTQGLNRQIRRMCEALGYEVFKLRRVRIMNITLDGIPNGKWRYLSEAE 238
               I L +G NRQIRRM + LG+E  +L RV I  I L  +P G  R L+EAE
Sbjct: 257 SWIEIELDEGRNRQIRRMLDVLGFECLRLLRVSIGEIRLGDLPKGASRPLTEAE 310