Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 254 a.a., pseudouridine synthase, Rsu (RefSeq) from Shewanella amazonensis SB2B

 Score =  142 bits (358), Expect = 9e-39
 Identities = 81/245 (33%), Positives = 133/245 (54%), Gaps = 13/245 (5%)

Query: 9   LGDC-MSQPTEKRLNKFISETGYCSRREADKLIEQGRVTLNGLQPEVGSKVTEQDEVCID 67
           + DC +S+ T  RL K+++E G  SRR A +LIE GRV ++G Q     +V + + V +D
Sbjct: 1   MSDCAISKGT--RLCKYLAEAGVASRRGASRLIETGRVCIDGQQASHSDRVFDSNRVTVD 58

Query: 68  GKPLRSKERPIYIALNKPTGITCTTERDVPGNIVDFIGHHKRIFPIGRLDKPSDGLIFLT 127
           G PL   +   Y   +KP GI C    + P +++  +    R+FP GRLDK S GL+ LT
Sbjct: 59  GAPLCPAQAKAYFLYHKPVGIDCRLRAEDPHSLIHCLPGDLRLFPAGRLDKDSRGLLLLT 118

Query: 128 NDGDIVNKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILDTVTLPCKVTQETQYSF 187
           NDG++  +++    +H+K Y++ ++K   P+ I  +++G +  +  T PC V       +
Sbjct: 119 NDGELTQRLMHPDFHHQKGYLITLNKAPQPDDIAAIAAGFDYGEGPTRPCVVEAAIDCGY 178

Query: 188 ----------RIVLTQGLNRQIRRMCEALGYEVFKLRRVRIMNITLDGIPNGKWRYLSEA 237
                     R+ LT+G  RQIRR+  A GY V  L R  I  + +  +  G+ R L+ +
Sbjct: 179 ATEDGNPRKLRMRLTEGKKRQIRRLWRARGYRVLDLLRESIQQLNIGKLEQGEIRSLTAS 238

Query: 238 EVSEI 242
           E+ ++
Sbjct: 239 ELRQL 243