Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 251 a.a., pseudouridine synthase, Rsu (RefSeq) from Shewanella amazonensis SB2B

 Score = 89.4 bits (220), Expect = 9e-23
 Identities = 64/225 (28%), Positives = 114/225 (50%), Gaps = 7/225 (3%)

Query: 20  RLNKFISETGYCSRREADKLIEQGRVTLNG-LQPEVGSKVTEQDEVCIDGKPLRSKERPI 78
           RL+ F+++T    ++   +L++  RVT++G +  E+  ++    ++ +    LR+ + P 
Sbjct: 7   RLDSFLAKTLNIPKKAVRELLKAERVTVDGKVALEMALQIGPFSQIYLGDTALRA-DTPR 65

Query: 79  YIALNKPTGITCTTERDVPGNIVDFIGHHKR--IFPIGRLDKPSDGLIFLTNDGDIVNKI 136
           Y+ LNKP G+   T+      ++D I    R  +  +GRLD  + GL+ L+ND      +
Sbjct: 66  YLMLNKPVGVVSATKDKEHKTVLDLIPEALRAGLHIVGRLDLNTSGLVLLSNDSRWSESM 125

Query: 137 LRAGNNHEKEYVVRVDKPITPEFIRQMSSG--VNILDTVTLPCKVTQETQYSFRIVLTQG 194
           ++ G +  KEY V ++ P+T ++I     G         TLP ++    +   R+ L +G
Sbjct: 126 MQPGAHVPKEYWVTLEHPLTEDYIAAFERGFYFETEGITTLPARLAILGEREARVELCEG 185

Query: 195 LNRQIRRMCEALGYEVFKLRRVRIMNITLD-GIPNGKWRYLSEAE 238
              QI+RM       V  L R RI  + LD G+  G+WR L++ E
Sbjct: 186 KYHQIKRMFGRFQNPVVALHRHRIGALMLDPGLAPGQWRPLTDDE 230