Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 230 a.a., pseudouridine synthase, Rsu (RefSeq) from Shewanella amazonensis SB2B

 Score =  101 bits (251), Expect = 2e-26
 Identities = 70/229 (30%), Positives = 121/229 (52%), Gaps = 7/229 (3%)

Query: 20  RLNKFISETGYCSRREADKLIEQGRVTLNGL-QPEVGSKVTEQDEVCIDGKPLRSKERPI 78
           RL+K+++ET   SR  A K I  G V+ +G+   +   KV +   VC  G+ L +     
Sbjct: 2   RLDKYLAETTALSRGLAKKAINSGDVSCDGVVMKDPAFKVPQGARVCFQGEVL-ALVGVR 60

Query: 79  YIALNKPTGITCTTERDVPGNIVDF--IGHHKRIFPIGRLDKPSDGLIFLTNDGDIVNKI 136
           Y+ L+KP    C+T+ +   +++    I    ++   GRLD  + GL+ +T+DG   +K+
Sbjct: 61  YLMLHKPVDTICSTQDEYYPSVLSLLDIARPDKLHIAGRLDADTTGLVLITDDGLWSHKV 120

Query: 137 LRAGNNHEKEYVVRVDKPITPEFIRQMSSGV--NILDTVTLPCKVTQETQYSFRIVLTQG 194
                +  K Y V++ + +T + I Q + GV  N  D +T P K+   +     + +T+G
Sbjct: 121 TSPKRDCAKRYRVQLAESLTDDLIAQFAEGVQLNGEDGLTKPAKLELLSDTEALLSITEG 180

Query: 195 LNRQIRRMCEALGYEVFKLRRVRIMNITLD-GIPNGKWRYLSEAEVSEI 242
              Q++RM  A+G +V  L R  +  I LD  +  G+WRYL+EAE++ +
Sbjct: 181 KYHQVKRMFAAVGNKVIGLHREAVGAIELDPQLAPGEWRYLTEAEIASV 229