Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 295 a.a., pseudouridine synthase, Rsu (RefSeq) from Shewanella amazonensis SB2B

 Score = 95.5 bits (236), Expect = 1e-24
 Identities = 76/279 (27%), Positives = 133/279 (47%), Gaps = 16/279 (5%)

Query: 19  KRLNKFISETGYCSRREADKLIEQGRVTLNGLQPEVGSKVTEQDEVCIDGKPLRSKERPI 78
           ++L K ++  G+ SRRE +  I  GRV++NG    +G +V    +V +DG+ +  K    
Sbjct: 3   EKLQKVLARAGHGSRREMEAWIAAGRVSINGEIANLGDRVDADAKVRLDGRLVSIKSADD 62

Query: 79  YI----ALNKPTGITCTTERDVPGNIVDFIGHHK----RIFPIGRLDKPSDGLIFLTNDG 130
            I    A +KP G  C+  +D  G    F    K    R   +GRLD  + GL+  T+DG
Sbjct: 63  IICRVLAYHKPEGEICS-RKDPEGRPTVFDRLPKLRDARWVAVGRLDINTSGLLLFTSDG 121

Query: 131 DIVNKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILDTVT----LPCKVTQETQYS 186
           ++ N+++   N  ++EY VR    +    I+++ +GV + D       +     +     
Sbjct: 122 ELANRLMHPSNEVDREYAVRTFGEVNDFTIQKLRTGVMLEDGPAQFDYVKAAGGEGVNQW 181

Query: 187 FRIVLTQGLNRQIRRMCEALGYEVFKLRRVRIMNITL-DGIPNGKWRYLSEAEVSEILAM 245
           + + L +G NR++RR+ E+   +V +L RVR   I L   +P G W  L   +V+ +  +
Sbjct: 182 WHVGLREGRNREVRRLWESQEVQVSRLIRVRYGMIELPKTLPRGGWIELPLEQVNYLRQL 241

Query: 246 CEDSSGTEEASRVAQSGDTIKRATDAKLFDSREANKESK 284
                  E  S +     ++ RA+  +    R A ++SK
Sbjct: 242 A--GMDPETRSMIGTDKHSVARASQVRSAKIRRAVRKSK 278