Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., putative ribosomal large subunit pseudouridine synthase B from Phaeobacter inhibens DSM 17395

 Score =  103 bits (258), Expect = 6e-27
 Identities = 92/330 (27%), Positives = 141/330 (42%), Gaps = 14/330 (4%)

Query: 16  PTEKRLNKFISETGYCSRREADKLIEQGRVTLNG--LQPEVGSKVTEQDEVCIDGKPLRS 73
           P   R+ K +S  G  SRREA+++I +GRV +NG  +     + V  +D + +DG P++ 
Sbjct: 43  PEGDRIAKVLSRAGVASRREAERMIAEGRVAVNGKVIDSPALNVVLGKDRIVVDGNPMQD 102

Query: 74  KERPIYIALNKPTGITCTTERDVP-GNIVDFIGHH-KRIFPIGRLDKPSDGLIFLTNDGD 131
            E P     +KP+G+  TT  ++    I D +     R+  +GRLD  S+GL+ LTNDG 
Sbjct: 103 PEPPRLWMYHKPSGLVTTTNDELDRRTIFDALPEDMPRVMTVGRLDLNSEGLLLLTNDGG 162

Query: 132 IVNKILRAGNNHEKEYVVRVD-KPITPEFIRQMSSGVNILDTVTLPCKVTQETQYSFRIV 190
           I  ++        + Y VR++ +P   +F   +  G+ I      P  V  + Q      
Sbjct: 163 IKRQLELPSTGWLRRYRVRINGRPKDTDF-EPLRQGLVIEGERFQPMTVALDRQQGANAW 221

Query: 191 LTQGL----NRQIRRMCEALGYEVFKLRRVRIMNITLDGIPNGKWRYLSEAEVSEILAMC 246
           LT GL    NR+IRR  E +G+ V +L R+      L  +  G+   L    V + L + 
Sbjct: 222 LTIGLREGKNREIRRAIEDIGFTVNRLLRLSYGPFQLGNLKPGEVEELRPRVVRDQLGLA 281

Query: 247 EDSSGTEEASR--VAQSGDTIKRAT--DAKLFDSREANKESKARRNPKTYHGKNAQEFRH 302
              +  +E  +  V Q     K  T   AK           K    P      +A     
Sbjct: 282 APETEEDEKPKRPVRQRPGAGKPGTKPGAKPDFKSGGKPGGKPSGKPSGRSFGSADRSSE 341

Query: 303 APNSKKAQRRPSSPSSNTASGSKPTPRTGG 332
            P  +   R    P    AS  KP+ R  G
Sbjct: 342 KPGDRSGARPAGKPGGKFASKGKPSDRFAG 371