Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 238 a.a., pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score =  175 bits (444), Expect = 9e-49
 Identities = 92/234 (39%), Positives = 141/234 (60%), Gaps = 13/234 (5%)

Query: 20  RLNKFISETGYCSRREADKLIEQGRVTLNG-----------LQPEVGSKVTEQDEVCIDG 68
           RL ++++ TG CSRR A +LI  GRV+L             ++   G++ +    VC+DG
Sbjct: 2   RLAQYLALTGRCSRRAASRLIRNGRVSLGDRLAKHTDSIELIETPTGTQASLS--VCVDG 59

Query: 69  KPLRSKERPIYIALNKPTGITCTTERDVPGNIVDFIGHHKRIFPIGRLDKPSDGLIFLTN 128
           +PL       Y   NK  G  C    +   +++  +    R++P+GRLDK S GL+ LTN
Sbjct: 60  EPLPPIADKAYWIFNKAVGTDCRLLAEDTTSLIHLLPRQPRLYPVGRLDKDSRGLLLLTN 119

Query: 129 DGDIVNKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILDTVTLPCKVTQETQYSFR 188
           DG++  +++     H K Y VR+D+P   +F+ +M++GV+  D  T PC+VT+  Q SF 
Sbjct: 120 DGELTQRLMHPSFAHHKRYHVRLDRPFDDDFVVKMAAGVSYKDVTTQPCQVTRLGQDSFE 179

Query: 189 IVLTQGLNRQIRRMCEALGYEVFKLRRVRIMNITLDGIPNGKWRYLSEAEVSEI 242
           IVLTQGLNRQIRRM + LG++V  L+RV I ++TL  +P G+ R L++AE+ E+
Sbjct: 180 IVLTQGLNRQIRRMSKTLGHKVIDLKRVAIESLTLGDLPEGEMRPLTQAELDEL 233