Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 230 a.a., pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score =  123 bits (308), Expect = 5e-33
 Identities = 73/229 (31%), Positives = 132/229 (57%), Gaps = 7/229 (3%)

Query: 20  RLNKFISETGYCSRREADKLIEQGRVTLNGLQPEVGS-KVTEQDEVCIDGKPLRSKERPI 78
           RL+KFISE+   +R  A K + +G VT++G   + GS K+ E  +VC+DG+P+ S   P 
Sbjct: 2   RLDKFISESTQLTRSLAKKALHRGEVTVDGQVIKDGSFKLNESQQVCLDGEPI-SLIGPR 60

Query: 79  YIALNKPTGITCTTERDVPGNIVDFIG--HHKRIFPIGRLDKPSDGLIFLTNDGDIVNKI 136
           +I L+KP    C+T  +V  ++++ +   H + +   GRLD  + GL+ +T+DG   +++
Sbjct: 61  FIMLHKPADTLCSTVDEVYPSVLNLLDLPHKEDLHIAGRLDADTTGLVLITSDGQWSHRV 120

Query: 137 LRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNIL--DTVTLPCKVTQETQYSFRIVLTQG 194
                   K Y+V++  P+  E++ Q ++G+ +   + +T P  +     +  R+ +T+G
Sbjct: 121 TSPKRECGKTYLVQLADPLKAEWVEQFATGLALRSEEGLTKPATLELLGSHEARLTITEG 180

Query: 195 LNRQIRRMCEALGYEVFKLRRVRIMNITLD-GIPNGKWRYLSEAEVSEI 242
              Q++RM  A+G +V  L R  +  I LD  +  G+WRYL+EAE++ +
Sbjct: 181 KYHQVKRMFAAVGNKVVGLHRESVGEIVLDESLAPGEWRYLTEAEIASV 229