Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 293 a.a., pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score = 98.6 bits (244), Expect = 2e-25
 Identities = 83/294 (28%), Positives = 144/294 (48%), Gaps = 23/294 (7%)

Query: 19  KRLNKFISETGYCSRREADKLIEQGRVTLNGLQPEVGSKVTEQDEVCIDGKPLRSKERPI 78
           ++L K ++  G+ SRRE +  I  GRV+++G   ++G ++    +V IDG+ +  K    
Sbjct: 8   EKLQKVLARAGHGSRREMEAWIAAGRVSIDGEIAKLGDRIEADAKVRIDGRTVSIKSEDD 67

Query: 79  Y----IALNKPTGITCTTERDVPGNIVDFIGHHK----RIFPIGRLDKPSDGLIFLTNDG 130
                IA +KP G  C+  +D  G    F    K    R   +GRLD  + GL+  T+DG
Sbjct: 68  LVCRVIAYHKPEGEICS-RKDPEGRPTVFDRLPKTRDSRWVAVGRLDINTSGLLLFTSDG 126

Query: 131 DIVNKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILDTVTLPCKVT----QETQYS 186
           ++ N+++   +  E+EY VR    +T   I+++ SGV + D      K+     +     
Sbjct: 127 ELANRLMHPSHEVEREYAVRTFGEVTDACIQRLRSGVTLEDGPAHFDKIKPAGGEGMNKW 186

Query: 187 FRIVLTQGLNRQIRRMCEALGYEVFKLRRVRIMNITL-DGIPNGKWRYLSEAEVSEILAM 245
           + + L +G NR++RR+ E+   +V +L R+R   I L   +P G W  L   +V+ +  +
Sbjct: 187 WHVSLAEGRNREVRRLWESQEVQVSRLIRIRYGMIDLPKSLPRGGWVELPIEQVNYLRKL 246

Query: 246 CEDSSGTEEASRVAQSGDTIKRATDAKLFDSREANKESKARRNPKTYHGKNAQE 299
               +G +E +R     D    A  AK+    ++ K  +A R  KT  GK  ++
Sbjct: 247 ----AGMDEETRTLLGTDKHSVAR-AKV----KSAKIRRAVRKHKTTAGKTPRQ 291