Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 236 a.a., pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score =  102 bits (254), Expect = 1e-26
 Identities = 65/229 (28%), Positives = 125/229 (54%), Gaps = 7/229 (3%)

Query: 20  RLNKFISETGYCSRREADKLIEQGRVTLNG-LQPEVGSKVTEQDEVCIDGKPLRSKERPI 78
           RL++FIS+     R++   ++ +GRV+++G +  +   ++ +  +V +DG+ LR +E+PI
Sbjct: 7   RLDRFISQHCQIPRKQVRLILAKGRVSVDGQVVRDADCQIDQFSQVMLDGQALR-QEQPI 65

Query: 79  YIALNKPTGITCTTERDVPGNIVDFIGHH--KRIFPIGRLDKPSDGLIFLTNDGDIVNKI 136
           Y+ L+KP G+   T+ D    ++D +  +  K +  +GRLD  + GL+ LTND     +I
Sbjct: 66  YLMLHKPVGVVSATKDDEHKTVMDLLPDYQDKGLHIVGRLDLNTSGLLLLTNDSRWSKRI 125

Query: 137 LRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNIL--DTVTLPCKVTQETQYSFRIVLTQG 194
           +   +   K+Y+V +  P+T  +++  + G      +  T P ++     +  R+ L +G
Sbjct: 126 MSPEHKVAKQYLVTLKAPLTQAYVKAFAEGFYFAFENITTQPAQLEILEPHLARVTLHEG 185

Query: 195 LNRQIRRMCEALGYEVFKLRRVRIMNITLD-GIPNGKWRYLSEAEVSEI 242
              QI+RM      +V  L R+ + N+ LD  +  G++R L+  EV+ I
Sbjct: 186 RYHQIKRMFGRFRNQVMALHRLSVGNLILDETLAVGQYRPLTPQEVASI 234