Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 532 a.a., pseudouridine synthase family protein from Dechlorosoma suillum PS

 Score =  133 bits (334), Expect = 1e-35
 Identities = 78/237 (32%), Positives = 125/237 (52%), Gaps = 18/237 (7%)

Query: 20  RLNKFISETGYCSRREADKLIEQGRVTLNG-LQPEVGSKVTEQDEVCIDGKPLRSKERPI 78
           RL+K +SE G CSRREAD+ IE G V ++G +  E+GS++     + +D +  + +   +
Sbjct: 294 RLSKVMSEQGLCSRREADEWIEAGWVKVDGKVVSELGSRIVPTARIEVDPEARKHQAESV 353

Query: 79  YIALNKPTGITCTTERDVPGNIVDFI-----------------GHHKRIFPIGRLDKPSD 121
            I L+KP G       D     V  +                  H +R+ P GRLD  S 
Sbjct: 354 TIILHKPIGYVSGQAEDGYEPAVVLVQPENRWEEDKGGTRFKSAHLRRLAPAGRLDIDST 413

Query: 122 GLIFLTNDGDIVNKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILDTVTLPCKVTQ 181
           G++ LT DG +  +++   +  EKEY+VRV+  +    +  ++ G+++      P  V+ 
Sbjct: 414 GMLVLTQDGRVAKRLIGEDSTVEKEYLVRVEGELIENGLALLNHGLSLDGVKLKPAHVSW 473

Query: 182 ETQYSFRIVLTQGLNRQIRRMCEALGYEVFKLRRVRIMNITLDGIPNGKWRYLSEAE 238
           + +   R VL +G  RQIRRMCE +G +V  L+R+RI ++ L  +P G+WRYL   E
Sbjct: 474 QNEEQLRFVLREGRKRQIRRMCELVGLKVVGLKRIRIGSVVLGKLPPGQWRYLRSDE 530