Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 312 a.a., pseudouridine synthase family 1 protein from Marinobacter adhaerens HP15

 Score =  277 bits (708), Expect = 3e-79
 Identities = 157/316 (49%), Positives = 200/316 (63%), Gaps = 18/316 (5%)

Query: 13  MSQPTEKRLNKFISETGYCSRREADKLIEQGRVTLNGLQPEVGSKVTEQDEVCIDGKPL- 71
           M+     RLNK+ISE+G CSRREAD+ IEQG V +NG +  VG +V   D V ++G+ + 
Sbjct: 1   MTTGNSTRLNKYISESGMCSRREADRYIEQGNVYINGKRATVGDQVLPGDTVKVNGQVIE 60

Query: 72  -RSKERPIYIALNKPTGITCTTERDVPGNIVDFIGHHKRIFPIGRLDKPSDGLIFLTNDG 130
            R++E  ++IALNKP GI  TT+     NI  F+GH +RIFPIGRLDK S GLIF+T++G
Sbjct: 61  PRAEEDLVFIALNKPVGIVSTTDSAEKHNIQRFVGHSERIFPIGRLDKDSQGLIFMTSNG 120

Query: 131 DIVNKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILDTVTLPCKVTQETQYSFRIV 190
           D+VNKILRAGNNHEKEY+V VDKP+T EF+  M++GV IL T+T  CKV++E+++ FRI 
Sbjct: 121 DLVNKILRAGNNHEKEYLVTVDKPVTREFVEGMANGVPILGTMTKKCKVSRESRFVFRIT 180

Query: 191 LTQGLNRQIRRMCEALGYEVFKLRRVRIMNITLDGIPNGKWRYLSEAEVSEILAMCEDSS 250
           L QGLNRQIRRMCE  GYEV KL R+RIMN++L G+  G+WR LSE E++ +     DSS
Sbjct: 181 LVQGLNRQIRRMCEYFGYEVTKLERIRIMNVSLKGLAVGQWRDLSEKELAGLFDAIRDSS 240

Query: 251 GTEEASRVAQSGDTIKRATDAKLFDSREANKESKARRNPKTYHGKNAQEFRHAPNSKKAQ 310
              EA   A      K  T AK    R+    S          GK     R  P  K A 
Sbjct: 241 --SEAPPGAGKPAKKKSGTKAKPKPDRKPGSASTP--------GKPGGARRPGPKGKPA- 289

Query: 311 RRPSSPSSNTASGSKP 326
                P    ASG +P
Sbjct: 290 -----PGKKPASGKRP 300