Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 295 a.a., 23S rRNA pseudouridylate synthase B from Klebsiella michiganensis M5al

 Score =  108 bits (269), Expect = 2e-28
 Identities = 89/290 (30%), Positives = 137/290 (47%), Gaps = 21/290 (7%)

Query: 19  KRLNKFISETGYCSRREADKLIEQGRVTLNGLQPEVGSKVTEQD--EVCIDGKPLRSKER 76
           ++L K ++  G+ SRRE +  IE GRV+++G    +G +V      ++ IDG  +  KE 
Sbjct: 3   EKLQKVLARAGHGSRREIEAKIEAGRVSVDGKIATLGDRVEIVPGLKIRIDGHLISVKES 62

Query: 77  PIYI----ALNKPTGITCTTERDVPGNIVDFIGHHK----RIFPIGRLDKPSDGLIFLTN 128
              I    A  KP G  CT   D  G    F    K    R   +GRLD  + GL+  T 
Sbjct: 63  AEQICRVLAYYKPEGELCT-RNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121

Query: 129 DGDIVNKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILD----TVTLPCKVTQETQ 184
           DG++ N+++      E+EY VRV   I  + +RQ+S GV + D      T+     +   
Sbjct: 122 DGELANRLMHPSREVEREYAVRVFGQIDDDKLRQLSRGVQLEDGPAAFKTIKFTGGEGIN 181

Query: 185 YSFRIVLTQGLNRQIRRMCEALGYEVFKLRRVRIMNITL-DGIPNGKWRYLSEAEVSEIL 243
             + + LT+G NR++RR+ EA+G +V +L RVR  +I L  G+P G +  L  A+ + + 
Sbjct: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDILLPKGLPRGGYTELDLAQTNYLR 241

Query: 244 AMCE-----DSSGTEEASRVAQSGDTIKRATDAKLFDSREANKESKARRN 288
            + E      S    E  R     + I+RA       S   N    + RN
Sbjct: 242 ELVELTPETTSKVAVEKDRRRMKANQIRRAVKRHSQVSNNNNNRRSSSRN 291