Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 292 a.a., ribosomal large subunit pseudouridine synthase B (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  120 bits (302), Expect = 3e-32
 Identities = 83/240 (34%), Positives = 129/240 (53%), Gaps = 18/240 (7%)

Query: 20  RLNKFISETGYCSRREADKLIEQGRVTLNG-LQPEVGSKV-TEQDEVCIDGKPLR----- 72
           RLNK +S  G CSRR+AD LI  G+V +NG +  E+G +V    D + ++G+ L      
Sbjct: 47  RLNKALSGAGVCSRRQADTLIAGGKVRVNGEVVTEMGRRVFPATDRIEVEGRLLACGEAL 106

Query: 73  SKERPIYIALNKPTGITCTTERDVPGN--IVDFIGHHK---RIFPIGRLDKPSDGLIFLT 127
           ++ R  Y+ LNKP  +  T  RD  G   I+D +       R++P+GRLD  S+GL+ LT
Sbjct: 107 NRHRHTYVMLNKPVQVVSTV-RDPQGRTTILDILPDDLKTVRLYPVGRLDFFSEGLLLLT 165

Query: 128 NDGDIVNKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILD---TVTLPCKVTQETQ 184
           +DGD+ +++     +  K Y V V + I P  +  M SG+ + +      +   +   ++
Sbjct: 166 DDGDLTHRLTHPKWHLPKYYRVLVREDIPPAALTAMRSGMTLAEGDRVAPVEAYIIDRSE 225

Query: 185 Y--SFRIVLTQGLNRQIRRMCEALGYEVFKLRRVRIMNITLDGIPNGKWRYLSEAEVSEI 242
           Y     +VL QG+NRQIRRMC  LG  V +L R++   + L  +  G  R L + EV  +
Sbjct: 226 YGVELEMVLHQGINRQIRRMCRDLGLTVLRLLRIQQGPVELGNLSRGACRRLEDHEVKAL 285