Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., pseudouridine synthase from Burkholderia phytofirmans PsJN

 Score =  117 bits (294), Expect = 6e-31
 Identities = 76/246 (30%), Positives = 134/246 (54%), Gaps = 11/246 (4%)

Query: 20  RLNKFISETGYCSRREADKLIEQGRVTLNGLQPEVGSKVTEQDEVCIDGKPLRSK---ER 76
           +L+K ++E G  SRR+ ++LI  GRV++NG    +G ++   D+V I+GKP++ K   + 
Sbjct: 213 KLHKVLAEAGMGSRRDMEELIVAGRVSVNGEPAHIGQRIMPTDQVRINGKPVKRKLANKP 272

Query: 77  PIYIALNKPTG-ITCTTERDVPGNIVDFIGHHK--RIFPIGRLDKPSDGLIFLTNDGDIV 133
           P  +  +KPTG I    + +   ++ D +   K  +   +GRLD  ++GL+ LT  GD+ 
Sbjct: 273 PRVLLYHKPTGEIVSHADPEGRASVFDNLPPMKTAKWLAVGRLDFNTEGLLMLTTSGDLA 332

Query: 134 NKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILDTVTLPCKVT----QETQYSFRI 189
           N+ +    + E+EY VRV   +     +++ +GV + D      ++     + T + + +
Sbjct: 333 NRFMHPRYSVEREYAVRVVGELAEGMRQKLLNGVELEDGPANFLRIRDGGGEGTNHWYHV 392

Query: 190 VLTQGLNRQIRRMCEALGYEVFKLRRVRIMNITL-DGIPNGKWRYLSEAEVSEILAMCED 248
            L +G NR++RRM EA G  V +L R R   I+L  G+  G+W  L + +V  ++A    
Sbjct: 393 ALAEGRNREVRRMFEAAGLMVSRLIRTRHGPISLPKGLKRGRWEELEDNQVRALMASVGL 452

Query: 249 SSGTEE 254
            + TEE
Sbjct: 453 KAPTEE 458