Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 291 a.a., ribosomal large subunit pseudouridine synthase B (RefSeq) from Shewanella sp. ANA-3

 Score = 98.6 bits (244), Expect = 2e-25
 Identities = 78/287 (27%), Positives = 139/287 (48%), Gaps = 21/287 (7%)

Query: 19  KRLNKFISETGYCSRREADKLIEQGRVTLNGLQPEVGSKVTEQDEVCIDGKPLRSKERPI 78
           ++L K ++  G+ SRRE +  I  GRV+++G+   +G ++    +V IDG+ +  K    
Sbjct: 3   EKLQKVLARAGHGSRREMEAWIAAGRVSIDGVIANLGDRIEADAKVRIDGRAVSLKSADD 62

Query: 79  YI----ALNKPTGITCTTERDVPGNIVDFIGHHK----RIFPIGRLDKPSDGLIFLTNDG 130
            I    A +KP G  C+  +D  G    F    K    R   +GRLD  + GL+  T+DG
Sbjct: 63  VICRVLAYHKPEGEICS-RKDPEGRPTVFDRLPKVRDSRWVAVGRLDINTSGLLLFTSDG 121

Query: 131 DIVNKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILDTV----TLPCKVTQETQYS 186
           ++ N+++   N  E+EY VR    +    ++++ +GV + D +     +     +     
Sbjct: 122 ELANRLMHPSNEVEREYAVRTFGEVPEAAVQRLRTGVMLEDGMAQFDAIKAAGGEGMNQW 181

Query: 187 FRIVLTQGLNRQIRRMCEALGYEVFKLRRVRIMNITL-DGIPNGKWRYLSEAEVSEILAM 245
           + + L +G NR++RR+ E+   +V +L RVR   + L   +P G W  L   +V+ +  +
Sbjct: 182 WHVCLREGRNREVRRLWESQEVQVSRLIRVRYGMVELPKSLPRGGWVELPIEQVNYLRQL 241

Query: 246 CEDSSGTEEASRVAQSGD--TIKRATDAKLFDSREANKESKARRNPK 290
               +G E  +R   + D  ++ RA   K    R A ++ K    PK
Sbjct: 242 ----AGLEPETRTMLAADKHSVARA-QVKSAKIRRAVRKHKVTATPK 283