Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 235 a.a., ribosomal small subunit pseudouridine synthase A (RefSeq) from Shewanella sp. ANA-3

 Score =  103 bits (258), Expect = 3e-27
 Identities = 73/236 (30%), Positives = 124/236 (52%), Gaps = 9/236 (3%)

Query: 13  MSQPTEKRLNKFISETGYCSRREADKLIEQGRVTLNG-LQPEVGSKVTEQDEVCIDGKPL 71
           +S+P   RL+KFI E+   +R  A K + +G +T +G +  + G KV E  +VC++G+ +
Sbjct: 3   LSRPV--RLDKFICESTSLTRSLAKKALHRGDITCDGAVIKDAGFKVLEGMQVCLEGEFI 60

Query: 72  RSKERPIYIALNKPTGITCTTERDVPGNIVDFIGHHK--RIFPIGRLDKPSDGLIFLTND 129
            S     Y+ LNKP    C+T  +V  +++  +   K   +   GRLD  + GL+ +T+D
Sbjct: 61  -SLVGERYLMLNKPVDTICSTIDEVYPSVLSLLDIEKPETLHIAGRLDADTTGLVLITSD 119

Query: 130 GDIVNKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNIL--DTVTLPCKVTQETQYSF 187
           G   ++I     +  K Y+V + +P+    I   ++GV +   D +T P  +        
Sbjct: 120 GQWSHRITSPKKDCGKRYLVTLAEPVDESLIGVFAAGVELRNEDCLTKPALLEIIEPQLV 179

Query: 188 RIVLTQGLNRQIRRMCEALGYEVFKLRRVRIMNITLDG-IPNGKWRYLSEAEVSEI 242
           R+ +T+G   Q++RM  A+G  V  L R  I  I LD  +  G+WRYL+  E++ I
Sbjct: 180 RLTITEGKYHQVKRMFAAVGNHVVGLHRESIGKIELDAELALGEWRYLTSEEIASI 235