Pairwise Alignments

Query, 192 a.a., DNA endonuclease SmrA from Vibrio cholerae E7946 ATCC 55056

Subject, 196 a.a., Smr protein/MutS2 (RefSeq) from Shewanella loihica PV-4

 Score =  104 bits (260), Expect = 9e-28
 Identities = 65/200 (32%), Positives = 102/200 (51%), Gaps = 21/200 (10%)

Query: 1   MSQEDLELFQQMMGDVKTITHD----------TVELKKAHQVTEAQLAKREAAVSLADHD 50
           MS+++  LF   M  VK +             + E ++ H   + +LA  + ++ L D  
Sbjct: 1   MSEDESALFLASMHGVKPLKASNAVTPIQSGLSAEGQQRHHDAQRRLALEKLSLELNDIT 60

Query: 51  PEALSIDHAPMLKPDDMLEFKRDGVQDGVYRKLRLGKYPIQARLDLHRKTLKEARSEVIQ 110
           P          L+P  ++  K+ GVQ  V++  R GKY +QA LD+   +L  AR  +  
Sbjct: 61  P----------LEPHAVVSVKKQGVQGQVFKLFRQGKYDVQADLDVTGLSLARARELLFD 110

Query: 111 FIRQCMAMDIRTLLIVHGRGERSTP-PALMKSFVSHWLTQISEVQCAHSAQRLHGGTGAV 169
           F+    A  +R L+++HG G  S P PA +KS+V+ WL ++  VQ  HSA    GG GA+
Sbjct: 111 FVINSQASGLRNLIVIHGTGVNSQPIPAKLKSYVAAWLAELEVVQAFHSAPAAWGGPGAM 170

Query: 170 YVLLRKSAEKKAENRERHQK 189
            V+L KS + K +  E+H K
Sbjct: 171 MVMLMKSEQDKLDTAEQHAK 190