Pairwise Alignments

Query, 321 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., Outer membrane protein and related peptidoglycan-associated (lipo)proteins from Pseudomonas stutzeri RCH2

 Score =  105 bits (263), Expect = 1e-27
 Identities = 91/324 (28%), Positives = 144/324 (44%), Gaps = 30/324 (9%)

Query: 4   LAAIISATLLFASSAAVAEVYVGGKVGKSWLDDACLAGQSCEDDDQVVGAFLGYQANKWL 63
           + ++++AT L A +     V V    GK +  D+    +  + D ++ GA + Y     +
Sbjct: 11  IGSMVAATSLSALAQGQGAVEVEA-FGKHYFTDS---SRDVQRDGELYGAGVSYFLTDDV 66

Query: 64  SLEAGYDYLGKFTA-------AGLNDEKVQAVTL-------APKLSI-PLTEGIALYGKV 108
           SL   Y      T+        G  + K    +L       AP + + P       +  +
Sbjct: 67  SLGLSYGEYHDLTSKDPVGVDGGHKNIKGSLTSLDAAYHFGAPGVGLRPYVSAGVAHQSI 126

Query: 109 GGAYVDYGSKDDYSYLGAA-GLEFNTNHNVTMRLEYQNLTDINNDIVRARAE-TATLGIA 166
           G A  D G +D  ++     GL++    N   +     + +I+ D     AE  A +G+ 
Sbjct: 127 GQA--DRGGRDSSTFANVGTGLKYYFTENFFAKASVDGMYNIDAD----EAEWMAGVGVG 180

Query: 167 YKFGGSEEPAPVVEQRPAEPAPVAAPVEKVAVTKTFTFQHLDSSTFATASAELKPATVQK 226
             FGG       VE  P EPAP      +           LD   F    + ++  +   
Sbjct: 181 LNFGGGARQVAAVEPTP-EPAPAPIVDTEPEPAPELVRVELDVK-FDFDKSRVREESYSD 238

Query: 227 LDKIVGYLNQYPQAKVEVVGHTDSTGSEAYNQKLSERRAQAVAKAL-EAQGIDASRISAK 285
           +  +  ++ QYPQ    V GHTDS G++ YNQ+LSERRA+AV   L    G++  R+++ 
Sbjct: 239 IKNLADFMQQYPQTSTTVEGHTDSVGTDQYNQRLSERRAEAVRNVLVNEYGVEGGRVNSV 298

Query: 286 GLGESSPIASNATAEGREKNRRVE 309
           G GES P+A N+T EGR+ NRRVE
Sbjct: 299 GYGESRPVADNSTEEGRQINRRVE 322