Pairwise Alignments

Query, 321 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 344 a.a., Thrombospondin type 3 repeat:OmpA/MotB:OmpF from Pseudomonas syringae pv. syringae B728a

 Score =  108 bits (271), Expect = 1e-28
 Identities = 100/344 (29%), Positives = 148/344 (43%), Gaps = 56/344 (16%)

Query: 4   LAAIISATLLFASSAAVAEVYVGGKVGKSWLDDACLAGQSCEDDDQVVGAFLGYQANKWL 63
           +  I++AT   A +     V + G   K + D    + ++ ++D  + G  +GY     +
Sbjct: 11  IGTIVAATSFGALAQGQGAVEIEGFAKKEYYD----SDRNFKNDGNLFGGSVGYFLTDDV 66

Query: 64  SLEAGYDYLGKFTA-AGLN----DEKVQAV--------TLAPKLSIPLTEGI----ALYG 106
            L  GYD +    + +G N    D  + A+         L P +S   ++      A  G
Sbjct: 67  ELRLGYDEVHNVRSDSGKNIKGADTALDALYHFNNPGDMLRPYVSAGFSDQSIGQDARRG 126

Query: 107 KVGGAYVDYGSKDDYSYLGAAGLEFNTNHNVTMRLEYQNLTDINNDIVRARAETATLGIA 166
           + G  + + G        G A L F  N      +E Q   D  N          ++GI 
Sbjct: 127 RDGSTFANIG--------GGAKLYFTDNFYARAGVEAQYNIDQGNT-----EWAPSVGIG 173

Query: 167 YKFGGSEE-----PAPV---------------VEQRPAEPAPVAAPVEKVAVTKTFTFQH 206
             FGG  +     PAPV               V++ P  PA V    +            
Sbjct: 174 VNFGGGSKKVEAAPAPVAEVCSDSDNDGVCDNVDKCPDTPANVTVDADGCPAVAEVVRVE 233

Query: 207 LDSSTFATASAELKPATVQKLDKIVGYLNQYPQAKVEVVGHTDSTGSEAYNQKLSERRAQ 266
           LD   F    + +KP++   +  +  ++ QYPQ    V GHTDS G +AYNQKLSERRA 
Sbjct: 234 LDVK-FDFDKSVVKPSSYGDIKNLADFMQQYPQTTTTVEGHTDSVGPDAYNQKLSERRAN 292

Query: 267 AVAKALEAQ-GIDASRISAKGLGESSPIASNATAEGREKNRRVE 309
           AV + L  Q G+ ASR+++ G GE+ P+A NAT  GR  NRRVE
Sbjct: 293 AVKQVLVNQYGVGASRVNSVGYGETKPVADNATEAGRAVNRRVE 336