Pairwise Alignments

Query, 321 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 368 a.a., OmpA/MotB (RefSeq) from Shewanella amazonensis SB2B

 Score =  132 bits (331), Expect = 2e-35
 Identities = 110/350 (31%), Positives = 165/350 (47%), Gaps = 43/350 (12%)

Query: 6   AIISATLLF---ASSAAVAEVYVGGKVGKSWLDDAC--LAGQSC-EDDDQVVGAFLGYQA 59
           A++++ L F   AS   ++  YVGG VG +  + AC     +SC ED       F GY  
Sbjct: 9   ALLASALPFGVMASDEGMSPWYVGGGVGINNYEPACDQKTMRSCGEDSPYAWDVFAGYLF 68

Query: 60  NKWLSLEAGYDYLGKFT----AAGLNDEKVQAVTLAPKLSIPLTEGIALYGKVGGA-YVD 114
           N +  +E GY  LG+      A  LND   +  TL      P     +L  + G   Y+ 
Sbjct: 69  NDYFGVELGYRDLGRAEWTDYANNLNDVGAKGTTLGLVAFWPFASKWSLSAEAGAMNYLV 128

Query: 115 YGSK----DDYSYLG-----AAGLEFNTNHNVTMRLEY---QNLTDINNDIVRARAETAT 162
           Y +K    + YS  G      AG+ +N   N+ +  +Y   +NL +   + +   +    
Sbjct: 129 YNNKRWGSNYYSDSGIAPFVGAGIGYNFTDNLKLSAKYRRYENLDEEKWNTLEMESNYWG 188

Query: 163 LGIAYKFGGSEEP---APVV---------------EQRPAEPAPVAAPVEKVAVTKT-FT 203
           L ++Y+FG    P   APVV               ++ PA PA          V K   T
Sbjct: 189 LELSYRFGSKAAPVVAAPVVVAPVDSDNDGVNDDLDKCPATPADHKVDAYGCTVYKDDVT 248

Query: 204 FQHLDSSTFATASAELKPATVQKLDKIVGYLNQYPQAKVEVVGHTDSTGSEAYNQKLSER 263
             +L S  FA  S+ + P++ + ++K+  Y+NQ+P + VE+ GH  + G+  YN  LSE+
Sbjct: 249 THNLGSLRFANNSSVINPSSYESVEKLANYMNQHPGSTVEIGGHASNVGNPDYNMTLSEK 308

Query: 264 RAQAVAKAL-EAQGIDASRISAKGLGESSPIASNATAEGREKNRRVELVI 312
           RA A AK L E  GI A+R++AKG G + P+    TAE    NRRVE V+
Sbjct: 309 RANAAAKLLVEKYGISANRVTAKGYGITRPVMDGNTAEAHAANRRVEAVV 358