Pairwise Alignments

Query, 321 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 367 a.a., OmpA/MotB domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  113 bits (283), Expect = 6e-30
 Identities = 99/347 (28%), Positives = 159/347 (45%), Gaps = 42/347 (12%)

Query: 5   AAIISATLLFASSAA--VAEVYVGGKVGKSWLDDAC---LAGQSCEDDDQVVGAFLGYQA 59
           A ++++ L FA++AA  +   YVGG +G +  +  C      Q  EDD      F GY  
Sbjct: 8   AILLTSMLPFAANAAQELTPWYVGGGLGVNNYEPNCDQKTMKQCGEDDPYAWDVFGGYLF 67

Query: 60  NKWLSLEAGYDYLGKFT----AAGLNDEKVQAVTLAPKLSIPLTEGIALYGKVGGAYV-- 113
           N +  +E GY  LG+      A  LND   + +TL      P  +  +L  + G      
Sbjct: 68  NDYFGVELGYRDLGRAEWVDYANKLNDVGARGMTLGLVGFWPFADRWSLSAEAGAMNYLL 127

Query: 114 --------DYGSKDDYSYLGAAGLEFNTNHNVTMRLEYQNLTDINND---IVRARAETAT 162
                   +Y S    +    AG+ +N   N+ ++ +Y+   +++ D    +   +    
Sbjct: 128 SNNKQWGSEYYSDSGVAPYFGAGIGYNFTDNLKLQAKYRRYENLDEDKWNTLDMESNYWG 187

Query: 163 LGIAYKFGGSEEPA---PVV---------------EQRPAEPAPVAAPVEKVAVTKTFTF 204
           L ++Y+FG +   A   PVV               +Q    P+          V +  T 
Sbjct: 188 LELSYRFGRAAPAAVAAPVVVAPKDSDNDGVTDDKDQCANTPSNHKVDANGCTVYREVTE 247

Query: 205 QH-LDSSTFATASAELKPATVQKLDKIVGYLNQYPQAKVEVVGHTDSTGSEAYNQKLSER 263
           +H L S  FA  SA +  A+  +++K+  Y+NQ P+A V + GH  + G+  YN  LSER
Sbjct: 248 KHELGSIRFANNSAVVNSASYGQIEKLANYMNQNPRATVLIGGHASNVGNPDYNMDLSER 307

Query: 264 RAQAVAKALEAQ-GIDASRISAKGLGESSPIASNATAEGREKNRRVE 309
           RA AVA+ L ++ GI   R+SAKG G + P+    +AE  + NRR+E
Sbjct: 308 RANAVAELLVSKYGISQDRVSAKGYGITQPLIEGKSAEANKANRRIE 354