Pairwise Alignments

Query, 321 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 342 a.a., outer membrane protein A (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  150 bits (379), Expect = 4e-41
 Identities = 104/283 (36%), Positives = 151/283 (53%), Gaps = 19/283 (6%)

Query: 48  DQVVGA-FLGYQANKWLSLEAGYDYLGKFTA---AGLNDEKVQAVTLAPKLSIPLTEGIA 103
           D+  G+ +LGYQ N +L+ E  Y +LG   A    G      Q V LA +   PLT  + 
Sbjct: 57  DRFAGSVYLGYQVNPYLAPELSYQFLGSAYANYEQGQISGDFQQVVLAARFGYPLTTSLY 116

Query: 104 LYGKVGGAY-------VDYGSKDDYSYLGAAGLEFNTNHNVTMRLEYQNLTDINNDIVR- 155
            Y KVGGA        +  GS+  +S + AAG+E+     ++ RLE+Q    +  D +  
Sbjct: 117 PYVKVGGAGWFGDSEGLRSGSERGFSPIVAAGVEYAFTPRLSGRLEHQYTDSLGADSIGY 176

Query: 156 ARAETATLGIAYKFGGSEE---PAPVVEQRPAEPAPVAAPVEKVAVTKTFTFQHLDSSTF 212
                 TLG++++FG S     P P V  +  E  PV   VEK      ++ Q  +S  F
Sbjct: 177 TDHHLTTLGLSWRFGHSAPVTAPTPEVVTQVVELPPVVQIVEKRQFV--YSEQKGNSLLF 234

Query: 213 ATASAELKPATVQKLDKIVGYLNQYPQAKVEVVGHTDSTGSEAYNQKLSERRAQAVAKAL 272
           A  S+ L      +   +V +L Q+P A   + GHTDSTGS+ YNQ LSERRA +VA  L
Sbjct: 235 AHNSSVLN--NTSQFADVVSFLKQHPTASAVITGHTDSTGSDKYNQWLSERRAISVANYL 292

Query: 273 EAQGIDASRISAKGLGESSPIASNATAEGREKNRRVELVIPEF 315
            +QG+ ++++++ G GE++ +A N T  GR  NRRVE+ IPEF
Sbjct: 293 VSQGVQSAQLTSVGKGETASVADNTTENGRAMNRRVEITIPEF 335