Pairwise Alignments

Query, 321 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 370 a.a., OmpA family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  115 bits (287), Expect = 2e-30
 Identities = 98/357 (27%), Positives = 162/357 (45%), Gaps = 50/357 (14%)

Query: 7   IISATLLFASSAA--VAEVYVGGKVGKSWLDDACLAGQSCEDDDQVVGAFLGYQANKWLS 64
           ++++ L  A+SA+  +   YVG  +G +  +   +A  + +D+      F GY  N +  
Sbjct: 15  LLTSMLPLAASASQELTPWYVGAGLGVNNYEH--IATDNGDDNPYAWDIFAGYMFNDYFG 72

Query: 65  LEAGYDYLGK--FTAAGL-NDEKVQAVTLAPKLSIPLTEGIALYGKVGGAYV-------- 113
            E GY  LG   +T  G+ ND  V+  TL      PL    +L  + G  Y         
Sbjct: 73  AEIGYRDLGSADWTTGGISNDAGVKGATLGLVGVWPLGNRWSLSAEAGAMYYTLENSQHT 132

Query: 114 -----DYGSKDDYSYLGAAGLEFNTNHNVTMRLEY---QNLTDINNDIVRARAETATLGI 165
                 Y S D   Y+GA G+ +N   N+ ++ +Y   +NL D + + + A +    L +
Sbjct: 133 GTTSSSYSSNDFAPYVGA-GVGYNFTDNLKLQAKYRRYENLDDTDFNTIEADSNYWGLEL 191

Query: 166 AYKFGGSEEPAPVV--------------------EQRPAEPAPVAAPVEKVAVT---KTF 202
           +Y+FG     APV                     ++ PA PA     V+ V  T      
Sbjct: 192 SYRFGTPAAAAPVAAAVVAAAPVDSDNDGVYDDKDECPATPA--THKVDSVGCTLYENVK 249

Query: 203 TFQHLDSSTFATASAELKPATVQKLDKIVGYLNQYPQAKVEVVGHTDSTGSEAYNQKLSE 262
             + + S  FA  SA +K    + ++++  Y+N+ P+  VE+ GH  + G   YN  LS+
Sbjct: 250 KQEDVGSIQFANDSAVVKKEYYKDIERLANYMNKNPEFTVEIAGHASNVGKPEYNMVLSD 309

Query: 263 RRAQAVAKAL-EAQGIDASRISAKGLGESSPIASNATAEGREKNRRVELVIPEFQYQ 318
           +RA AVAK L E  GI  SR+++ G G + P+ +  + E    NRR+E ++   + Q
Sbjct: 310 KRADAVAKILVEKYGISQSRVTSNGYGITKPLVAGNSKEAHAANRRIEAIVTTTEKQ 366