Pairwise Alignments

Query, 321 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 356 a.a., porin OmpA from Klebsiella michiganensis M5al

 Score =  157 bits (398), Expect = 3e-43
 Identities = 126/364 (34%), Positives = 178/364 (48%), Gaps = 54/364 (14%)

Query: 1   MKKLAAIISATLL-FASSAAVAEV----YVGGKVGKSWLDDACLAGQSCE-------DDD 48
           MKK A  I+  L  FA+ A  A      Y G K+G S   D    G   +       +D 
Sbjct: 1   MKKTAIAIAVALAGFATVAQAAPKDNTWYAGAKLGWSQYHDTGFYGNGFKGNNGPVRNDQ 60

Query: 49  QVVGAFLGYQANKWLSLEAGYDYLGKFTAAGLNDE---KVQAVTLAPKLSIPLTEGIALY 105
              GAF GYQ N +L  E GYD+LG+    G  D    K Q V L  KL  P+T+ + +Y
Sbjct: 61  LGAGAFGGYQVNPYLGFEMGYDWLGRMAYKGSVDNGAFKAQGVQLTAKLGYPITDDLDIY 120

Query: 106 GKVGGAYVDYGSKDDYSYLG--------------AAGLEFNTNHNVTMRLEYQ---NLTD 148
            ++GG      SK +Y+  G              A GLE+    ++  RLEYQ   N+ D
Sbjct: 121 TRLGGMVWRADSKGNYASTGVSRSEHDTGVSPVFAGGLEWAVTRDIATRLEYQWVNNIGD 180

Query: 149 INNDIVRARAETATLGIAYKFGGSEEPAPVVEQRPAEPAPVAAPVEKVAVTKTFTFQHLD 208
                 R      +LG++Y+FG  ++ APVV      PAP  AP      TK FT +   
Sbjct: 181 AGTVGTRPDNGMLSLGVSYRFG-QDDVAPVVA-----PAPAPAPE---VTTKHFTLK--S 229

Query: 209 SSTFATASAELKPATVQKLDKIVGYL-NQYPQ-AKVEVVGHTDSTGSEAYNQKLSERRAQ 266
              F    + LKP   Q LD++   L N  P+     V+G+TD  GS+AYNQ+LSE+RAQ
Sbjct: 230 DVLFNFNKSTLKPEGQQALDQLYTQLSNMDPKDGSAVVLGYTDRIGSDAYNQQLSEKRAQ 289

Query: 267 AVAKALEAQGIDASRISAKGLGESSPIASNATAEGREK---------NRRVELVIPEFQY 317
           +V   L ++GI AS+ISA+G+GES+P+  N     + +         +RRVE+ +  ++ 
Sbjct: 290 SVVDYLVSKGIPASKISARGMGESNPVTGNTCDNVKARAALIDCLGPDRRVEIEVKGYKD 349

Query: 318 QVTE 321
            VT+
Sbjct: 350 VVTQ 353