Pairwise Alignments

Query, 687 a.a., TonB-dependent siderophore receptor from Vibrio cholerae E7946 ATCC 55056

Subject, 733 a.a., TonB-dependent receptor (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  134 bits (338), Expect = 1e-35
 Identities = 169/746 (22%), Positives = 305/746 (40%), Gaps = 92/746 (12%)

Query: 14  NKKFKLHTLS--------AMMMGLFTGSFAYAETQNTSNQEQEMPVLVVIGEKTQRSIYE 65
           N K  + T+S        A+   L   ++A  +  +  +   +M ++VV  +    S+ +
Sbjct: 7   NNKSSIFTISLTRAPLALAVSAALSASAWAQTDAIDKPDPNNDMEIMVVTADFRSASLEK 66

Query: 66  TSASVEVFDQDTIERTPGATEIDDLLQLIPNLVDSGQSNNMPTIRGIDGSGPSVGGLASF 125
             +S+ V D   I+    A   +D++  I N   SG S+  P    I G    VG    +
Sbjct: 67  MPSSITVIDAQQIQ-DENAQHFEDVMNSIANFNWSGGSSR-PKYFQIRG----VGEQEQY 120

Query: 126 AGTSPRLNMSIDGRSLTYSEIAFGPRSLWDMQQVEIYLGPQSYIQGRNTSAGAIVMKSND 185
            G +P  ++      +  S I     S++D+QQVE+  GPQ    G N  AG I +KSND
Sbjct: 121 QG-APNSSVGYIVDDIDLSGIGM-VSSMYDLQQVEVLRGPQGTRYGANALAGLIYLKSND 178

Query: 186 PTHHFESAVKAGIGESDYSQTAGMISAPIIQD-ELAFRLSFDQQKRDSFVDLAAFEPAGD 244
           PT  FE   +  +G  D    +G  S P+    +L +R++  Q +++ + D         
Sbjct: 179 PTDVFEHGAEVSLGNDDLQTFSGFSSGPLSDSGKLLYRVALQQHQQNGYRDNLYLNKEDT 238

Query: 245 PKKIEMNSVRGKLLYEPSALDGFKTTLTLSH--------------------MDSRGPQTE 284
             + E    R KL +   A D  +  LTL H                     D  G  ++
Sbjct: 239 NGRDEFTG-RAKLRW--YATDDLQLDLTLLHADFDNGYDVWSLTNDPTNTITDQPGVDSQ 295

Query: 285 NINVAGNEAF---RPVYETASFTTAWDIIWHLNDLFTFENNLVYADFSYDRYTNP----- 336
               AG +A       +E  S T+  +   H +    + N+  +A    +   N      
Sbjct: 296 RTTGAGFKATYSGAEQFELTSLTSFANTDHHYSYDGDWANSEYWASKQCEEGGNVSPCQY 355

Query: 337 ----NSRGDFNTDGKEFHIEPLLRYIALDGSVNTLIGARYYQSSQDDMYIDAASAYPMDG 392
               +  G   T  +EF +    +      S + LIG       +D+      + +P + 
Sbjct: 356 DYFWDKTGQRKTLSQEFRLSSTDQGRIFADSTDWLIGVYAMNLKEDNQLYSEYNTWPDE- 414

Query: 393 RTKAKSVFAEVTYALTPSINVNLAGRFERE---QVKRNVSHPRYKLDYDETSSVFLPKLD 449
                S +    YAL   ++ +L   +      +V+R  SH     + +   S  +    
Sbjct: 415 --VLDSQYEATNYALFGQLDTDLGADYVLSVGLRVERRNSHYSDTNNDNFDPSETMWGGH 472

Query: 450 VAYTPVQGQTYGI--KAAKGYNASGAGLAFNSMQFTGFRPYEFEQESIWNYEFYTR-HRF 506
           +A + V  +++ +  + A+GY A G  +    ++    +  EF+ E+++NYE   + H F
Sbjct: 473 IALSKVLNESHNVYARVARGYKAGGFNMTL-PVELNDKK--EFDTETLYNYEIGLKSHWF 529

Query: 507 SHSVEVLTNLFYNDFDSMQMTQTTSSGD------VFIANLDEASTYGAEIGSRWYATSSL 560
              ++    LFY D    Q+  +    +      ++  N   ++ YGAE+ + WYAT +L
Sbjct: 530 EGLIDTNLALFYMDRQDQQVAASQQDPNKPQRFILYTENAGSSNNYGAELDATWYATDNL 589

Query: 561 ELFANLGLLKT-----EFKETTGNT-----KELPRAPKMSANVGLLYDFGQGFEFSSN-A 609
           + +++LG L+T     ++++  G       ++L  +P ++ ++G  Y    G+  + N +
Sbjct: 590 QFYSSLGWLQTAYGNYQYQDKYGTDVDLTGRDLAHSPHLTYSLGGTYRANSGWFANLNMS 649

Query: 610 AYTGSYFSESGNSEKFAIDSYWVANAQLAYVFEHGRATLYATNLLDSDKTTLYLSTNNTL 669
             +  Y+S+S +S     + Y V NA+L Y      A L+  NL D +         N  
Sbjct: 650 GKSEFYYSDSNDSRS---EPYTVVNARLGYEASAWSAYLWGRNLFDEEYGVRGFYFGNEP 706

Query: 670 DQ---LKQ-----QPRMIGASVQLNF 687
           D     KQ      PR IG ++ + F
Sbjct: 707 DNGWAEKQYIRYGDPRQIGVTLNVKF 732