Pairwise Alignments

Query, 687 a.a., TonB-dependent siderophore receptor from Vibrio cholerae E7946 ATCC 55056

Subject, 653 a.a., TonB-dependent receptor C-terminal domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 72.4 bits (176), Expect = 6e-17
 Identities = 152/628 (24%), Positives = 237/628 (37%), Gaps = 66/628 (10%)

Query: 52  LVVIGEKTQRSIYETSASVEVFDQDTIERTPGATEIDDLLQLIPNLVDSGQSNNMPTIRG 111
           LVVIG ++ ++    +A+V V D   IE + GAT + D+L+        GQS    +   
Sbjct: 39  LVVIG-RSDKTPLNIAANVNVIDAAAIEMS-GATNLTDVLR--------GQSGIQISDNN 88

Query: 112 IDGSGPSVGGLASFAGTSPRLNMSIDGRSLTYSEIAFG-----PRSLWDMQQVEIYLGPQ 166
           I  S    G  AS A  +  +   +DGR L   +IA       P +L  +++VEI  G  
Sbjct: 89  IGTSFAMRGFSASTAVNNTLI--LLDGRRLNNIDIAAPSLNAIPLNL--VERVEILSGSA 144

Query: 167 SYIQGRNTSAGAIVMKSNDPTHHFESAVKAGIGESDYSQTAGMISAPIIQDELAFRLSFD 226
             + G     G I + +  P +   S   +G G  +  +  G +S  I +D   F LS  
Sbjct: 145 GVLYGDQAVGGVINIVTKSPENTGGSVQLSG-GSFNTYEGRGDVSGAINKDWRYF-LSGS 202

Query: 227 QQKRDSFVDLAAFEPAGDPKKIEMNSVRGKLLYEPSALDGFKT---TLTLSHMDSRGPQT 283
             + D++    A E      +I+  +       E S  D  +    +LT+        Q+
Sbjct: 203 YNQGDNYRQHNANETGSILGRIQYKTATDSFFVETSYYDDDRENPGSLTVDQFKFDPRQS 262

Query: 284 ENINVAGNEAFRPVYETASFTTAWDIIWH-LNDLFTFENNLVYADFSYDRYTNPNSRGDF 342
            N         +  Y     T A     H LN  +    +L Y+D            G  
Sbjct: 263 SN---------KSEYVHEMTTAARSGYQHQLNQNWALAADLDYSDTLVSSVNW--GAGSH 311

Query: 343 NTDGK-EFHIEPLLRYIALDGSVNTLIGARYYQSSQDDMYIDAASAYPMDGRTKAKSVFA 401
           NT     F  + L  Y    G +N + G    +   D  Y   A +   D     +S + 
Sbjct: 312 NTRSLLMFSPKALANYSTRQGELNLVTGLDISRGKAD--YDSMARSNVQD----MQSAYL 365

Query: 402 EVTYALTPSINVNLAGRFER---EQVKRNVSHPRYKLDYDETSSVFLPKLDVAYTPVQGQ 458
           + T  L+ +++  + GR+ R   E V  NV      LD D T+  F     + Y P    
Sbjct: 366 QATVPLSHTLSYVVGGRYARVTDELVDGNVYPNGIDLDEDATAFEF----GLNYRPSAEH 421

Query: 459 TYGIKAAKGYN-ASGAGLAFNSMQFTGFRPYEFEQ-ESIWNYEFYTRHRFSHSVEV-LTN 515
            + ++  + +  A     A+      G +P      E+ W++        S S+ V L  
Sbjct: 422 RFYLRGDENFRFAKVDEQAYTPKDVFGLKPQTGRSYEAGWDWTVA-----SQSLRVSLYR 476

Query: 516 LFYND---FDSMQMTQTTSSGDVFIANLDEASTYGAEIGSRWYATSSLELFANLGLLKTE 572
           L   D   FD         S      N D +  YGA     W  T +L+L      +  E
Sbjct: 477 LDLEDEIVFDPSAEKPVGGSFQGANVNADASRRYGASADWDWQVTQALQLGLEYNYIDAE 536

Query: 573 FKETTGNTKELPRAPKMSANVGLLYDFGQGFEFSSNAAYTGSYFSESGNS---EKFAIDS 629
           F +   + K+L    + S    +  D  +  +  + A YTG  F E  N+   EK A  S
Sbjct: 537 FTDGLNDGKKLSWVAEHSGRGYVSMDVAEHIQLFAEAIYTGERFVEGDNANQGEKLA--S 594

Query: 630 YWVANAQLAYVFEHGRATLYATNLLDSD 657
           Y + N  L Y  +   A+L   NL D D
Sbjct: 595 YVLGNLALNYSRDAWLASLRIDNLFDKD 622