Pairwise Alignments

Query, 377 a.a., flagellar basal-body protein from Vibrio cholerae E7946 ATCC 55056

Subject, 386 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  106 bits (264), Expect = 1e-27
 Identities = 94/376 (25%), Positives = 166/376 (44%), Gaps = 33/376 (8%)

Query: 23  AAWYEVTGSAAIVSSEEVARLHALEDALYKAVNFAGADIGS-ISNLMPLLESDRREYLFA 81
           A W E  G A I++        A EDA+ +A+++     G   +++         +  F+
Sbjct: 20  AQWLEAQGEAKIINGNIT---QAREDAIAQALSYVTLQSGGQFTSMQQTQNGQLTQTQFS 76

Query: 82  NHEV----RYILIEERKAINNVMYVRTRIDIYPSATA--CHVEQYKKTMLIGNIDLASPQ 135
             +     R  LI ER    + + V  R+D+  +A    C + Q K  +L+    +A   
Sbjct: 77  MSQQAEAGRVELISERIQ-GDTLSVNLRVDVLQNAKVQTCGMSQLKAAILVPQAQIADRS 135

Query: 136 QAVMGQIYQVGDDFAQVINRRLEQESR-SFVSVGTT------QYDIDPKAPERIKMIAQD 188
           Q   G +       ++ +   + +E + SF  V         Q  ID +       +++ 
Sbjct: 136 QLRYGNLGNFEKALSEKLGSIIAREGKASFAHVHANERLDIEQSLIDIRGYRLPSWLSEI 195

Query: 189 AGAQYIMGGMITDL-TATIEQKT--LQDDIINRQFAMEISVFDGKTGNEVMTRTYREVAR 245
             +QYI+   I D+ T  +E     L D    RQF + +S++ G +G ++ +  Y   A 
Sbjct: 196 TDSQYILMPEIIDISTEPVEASLFGLWDSYPQRQFQLRLSLYHGISGEQIWSEYYDAPAP 255

Query: 246 WPFPKTSQIDTRSARFWASTYGEMMLRVSRNIMLDLESEISCKITLPQIVAKFGTTATMD 305
           W F + + I  +S RFWAS+YG+ +  +      D++  + C+  L Q+V++      ++
Sbjct: 256 WEFERQATIPAQSNRFWASSYGKNIEMLLTQASEDIDKVLDCRPLLGQVVSRVDNRVIIN 315

Query: 306 LGRIHGVKQGDKLSLWHTGAFIDQQGLP------RNKVTQSEITLTVSRVYEHEAELTVD 359
           LGR HGVK GD+  L      + QQ LP      R   ++S   +T+ +V +  A   + 
Sbjct: 316 LGRNHGVKVGDQFQL------VLQQNLPDRLDNMRAVASESRAKITIDQVTQESATALLQ 369

Query: 360 QPELAYSIQIGDVMHK 375
               A +IQI D+  K
Sbjct: 370 GANGAINIQINDIAIK 385