Pairwise Alignments

Query, 377 a.a., flagellar basal-body protein from Vibrio cholerae E7946 ATCC 55056

Subject, 388 a.a., hypothetical protein (RefSeq) from Shewanella sp. ANA-3

 Score =  134 bits (338), Expect = 3e-36
 Identities = 107/394 (27%), Positives = 187/394 (47%), Gaps = 29/394 (7%)

Query: 1   MKKNILSIISALWMMLQLPSAHAAWYEVTGSAAIVSSEEVARLHALEDALYKAVNFAGAD 60
           ++KN+L I S L    Q   A+A W E +G A ++++  +A+  A E+A+ +AV++A   
Sbjct: 4   LRKNLLIISSLLLFAAQ---ANAEWVEASGEA-VITNGNIAQ--AREEAINQAVSYATLS 57

Query: 61  IG-SISNLMPLLESDRREYLFA-NHEVRYILIE--ERKAINNVMYVRTRIDIYPSATA-C 115
            G  I++       +  +  FA N   + I I+    +   N +YV  R+D+    T  C
Sbjct: 58  TGIQITSEQQTTNGNLTQNSFAINRYAQAISIQLVSERIQGNKIYVSLRLDLNDDPTQQC 117

Query: 116 HVEQYKKTMLIGNIDLASPQQAVMGQIYQVGDDFAQVINRRLEQESRSFVSVGTT----- 170
              Q K  +LI    +    Q   GQ+      F +VI+ +L      + S G +     
Sbjct: 118 PAGQLKAAILIPQAQIKDRAQLRYGQL----SGFEEVISEKLGNSIDGYSSTGFSHIHAK 173

Query: 171 ------QYDIDPKAPERIKMIAQDAGAQYIMGGMITDLTATIEQKTLQ---DDIINRQFA 221
                 Q  +D +       +++   +QYI+   I D++    Q T     D+   RQF 
Sbjct: 174 ERLDIAQELVDIRGYRLPSWLSEITDSQYILLPQIIDISTEPVQSTFMGWWDEAPLRQFQ 233

Query: 222 MEISVFDGKTGNEVMTRTYREVARWPFPKTSQIDTRSARFWASTYGEMMLRVSRNIMLDL 281
            ++S+F G +G EV ++TY   A W F + + I   S RFW S+YG  + ++ +    D+
Sbjct: 234 FKLSLFHGISGEEVWSKTYSTSAPWEFEEQAIIAPNSDRFWRSSYGRNISQIMQEATRDI 293

Query: 282 ESEISCKITLPQIVAKFGTTATMDLGRIHGVKQGDKLSLWHTGAFIDQQGLPRNKVTQSE 341
           ++ ++C+  L Q+V++ G    ++LGR HG++ GDK  +       D+    R   T+S 
Sbjct: 294 DNTLNCRPLLGQVVSRQGDRIILNLGRKHGIRVGDKFQVVLQQNLPDRLNEMRAVATKSR 353

Query: 342 ITLTVSRVYEHEAELTVDQPELAYSIQIGDVMHK 375
            T+ + +V E  A   +     AY++QI D+  K
Sbjct: 354 ATVKIEQVSEESATAILVDQNAAYNVQINDIALK 387