Pairwise Alignments

Query, 308 a.a., chemotaxis protein CheV from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., chemotaxis protein CheV (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  378 bits (970), Expect = e-109
 Identities = 190/307 (61%), Positives = 246/307 (80%), Gaps = 4/307 (1%)

Query: 1   MTGILDSVNQRTQLVGQNRLELLTFRLNGRQRYGINVFKVKEVLQCPKLTSMPNLHRLVK 60
           M+ ILDSVN+RTQLVGQNRLELL F+LNGRQR+GINVFKVKEVLQCP LT++P L+  VK
Sbjct: 1   MSSILDSVNKRTQLVGQNRLELLLFKLNGRQRFGINVFKVKEVLQCPPLTTLPKLNPYVK 60

Query: 61  GVAHIRGQTVSVIDMSLAVGGRPTTDVDKSFVVIAEFNRTIQAFLVSSVERIINMRWEAI 120
           GVAHIRG T+SVID+S A GGRP    +  F++I+E+NR++Q FLVSSVERIINM WEAI
Sbjct: 61  GVAHIRGTTISVIDLSAATGGRPLASTENCFIIISEYNRSVQGFLVSSVERIINMNWEAI 120

Query: 121 LPPPNGTGKSNYLTAVTNIDNELVEIIDVEKILAEITPVNEDMDSSIGEQIAQVEQEKEF 180
           +PPP G G+ +YLTAVT I+ ELVEI+DVEKIL EI+PV   +   + +Q+  +++ + +
Sbjct: 121 MPPPQGAGRYSYLTAVTEIEGELVEILDVEKILDEISPVKTAISEEVNQQLT-IDRTQHY 179

Query: 181 VRRILIADDSSVARKQVQRAIESIGFEVVTTKDGKDAYEKLLEMLSE-GPISNQISLVIS 239
              I++ DDS+VARKQ+ R++ES+  ++ T KDG++A +KL  + SE   ++++I L+IS
Sbjct: 180 --HIMVIDDSAVARKQIIRSLESLNLQIDTAKDGREALDKLKAIASEMNNVADEIPLIIS 237

Query: 240 DIEMPEMDGYTLTAEIRRHNELKDLYVILHSSLSGVFNQAMVERVGANAFIAKFNPDELG 299
           DIEMPEMDGYTLTAEIR   +LK++ V+LH+SLSGVFNQAMV++VGAN FIAKFNPDEL 
Sbjct: 238 DIEMPEMDGYTLTAEIRDDPKLKNIKVVLHTSLSGVFNQAMVQKVGANDFIAKFNPDELA 297

Query: 300 NAVKAAL 306
            AV   L
Sbjct: 298 AAVNKHL 304