Pairwise Alignments

Query, 235 a.a., flagellar hook assembly protein FlgD from Vibrio cholerae E7946 ATCC 55056

Subject, 221 a.a., Flagellar hook capping protein from Pseudomonas stutzeri RCH2

 Score = 49.7 bits (117), Expect = 5e-11
 Identities = 54/216 (25%), Positives = 101/216 (46%), Gaps = 18/216 (8%)

Query: 1   MAGVNNVGQSGLS--YIDQLKALQEQKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPV 58
           M+ VN+   + L+   IDQ+K  +     D TT      + +F+SL+  Q+  QDP KPV
Sbjct: 1   MSSVNSALDASLAGNSIDQVK--RAVNVSDATT-----MENNFISLMVAQIKYQDPTKPV 53

Query: 59  SNDQMIAQMASFATVDGIGKMNTQFESLNSSMTSNQALQASSLVGRDVLVPGAAGMKKPD 118
            + + + Q ++ + V  +  M +  ++    M + Q L A+ LVG+ V V     ++   
Sbjct: 54  DSTEFLNQFSAMSQVKSMENMTSLAQNNLVLMDNLQTLTAAGLVGQQVRV-AVDSLQLGT 112

Query: 119 GGMAAMVKLPQSIDNLFIRIENEAGQLVRTFDVGAKSSGDNRVEWDGKDQNGNPLPGGKY 178
             +     L  + +   + + +  G L  T ++GA++ G  +V +D  D     LP G+Y
Sbjct: 113 QPLQGQFTLAHASNRTAVVLTDSNG-LKTTVELGARAPG--QVPFD-IDPQRLGLPAGQY 168

Query: 179 KVKASGLLDGESKEFEVSTYANVNSVLLGKGDGNVL 214
            V    +++ ++ EF     A +   +    +G VL
Sbjct: 169 SV----VIESDNGEFPQVEVAGLVGNVRVSAEGPVL 200