Pairwise Alignments

Query, 235 a.a., flagellar hook assembly protein FlgD from Vibrio cholerae E7946 ATCC 55056

Subject, 227 a.a., Flagellar hook capping protein from Pseudomonas stutzeri RCH2

 Score =  148 bits (374), Expect = 8e-41
 Identities = 86/234 (36%), Positives = 134/234 (57%), Gaps = 7/234 (2%)

Query: 1   MAGVNNVGQSGLSYIDQLKALQEQKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVSN 60
           M+  N VG +G S +DQ +  ++++      G+      +FL LL  QL  Q+P +P  N
Sbjct: 1   MSTTNGVGGTG-SILDQYQFGEKREAKGNDLGKN-----EFLELLVAQLNNQNPLEPQEN 54

Query: 61  DQMIAQMASFATVDGIGKMNTQFESLNSSMTSNQALQASSLVGRDVLVPGAAGMKKPDGG 120
            + I Q+A F+TV+G+ K+N+  +++ S   S+QALQASSLVGR V+VP    +      
Sbjct: 55  GEFIGQLAQFSTVEGVEKLNSSMQTILSGYQSSQALQASSLVGRKVIVPTDKAVVDTSET 114

Query: 121 MAAMVKLPQSIDNLFIRIENEAGQLVRTFDVGAKSSGDNRVEWDGKDQNGNPLPGGKYKV 180
             A + LP S  N+F+ I +  G  V   ++G + +G+    WDGKD +GN LP G Y+ 
Sbjct: 115 FKASLVLPTSSSNVFVNIYDSTGAAVGRVNMGQQEAGNISFMWDGKDSSGNVLPPGTYRF 174

Query: 181 KASGLLDGESKEFEVSTYANVNSVLLGKGDGNVLLNLAGFDAPVRLAEVLEVGK 234
           +A     GE+K       ANV+SV LG+  G ++LNLAG  + + L++V  +G+
Sbjct: 175 EAQATYQGETKGLYTLLPANVDSVTLGQNGGELMLNLAGIGS-IGLSQVQIIGQ 227