Pairwise Alignments

Query, 235 a.a., flagellar hook assembly protein FlgD from Vibrio cholerae E7946 ATCC 55056

Subject, 242 a.a., flagellar basal body rod modification protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  194 bits (494), Expect = 1e-54
 Identities = 101/227 (44%), Positives = 150/227 (66%), Gaps = 4/227 (1%)

Query: 10  SGLSYIDQLKALQEQKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMAS 69
           +G  ++D ++   ++  P+    ++ L QEDF +LL++QL+ QDPFKPV NDQMIAQMAS
Sbjct: 19  TGNPFLDSVRLQTKEAVPEAK--KQELTQEDFFALLSQQLSMQDPFKPVENDQMIAQMAS 76

Query: 70  FATVDGIGKMNTQFESLNSSMTSNQALQASSLVGRDVLVPGAAG-MKKPDGGMAAMVKLP 128
           F+TVDGI  +N    +LN+ MTS+QALQAS LVG+ VL+P A+G +   +  +  ++   
Sbjct: 77  FSTVDGIANLNDHIVNLNTVMTSSQALQASGLVGQKVLIPSASGHVSAEEPNLKGVISTS 136

Query: 129 QSIDNLFIRIENEAGQLVRTFDVGAKSSGDNRVEWDGKDQNGNPLPGGKYKVKASGLLDG 188
           + I+ + +RIE++ GQLV+TF V     G+  V WDG D  G P+  G Y +KASG +DG
Sbjct: 137 KPIETIMVRIEDDKGQLVKTFSVDGSDGGNIDVNWDGLDAEGKPVADGTYTIKASGRVDG 196

Query: 189 ESKEFEVSTYANVNSVLLGKGDGNVLLNLAGFDAPVRLAEVLEVGKA 235
           +++E  VSTYA+V SV LG      +LNL G    ++L++VL V ++
Sbjct: 197 KAEELPVSTYAHVTSVSLGTAATGAILNLRGIGG-IKLSDVLAVAES 242