Pairwise Alignments

Query, 235 a.a., flagellar hook assembly protein FlgD from Vibrio cholerae E7946 ATCC 55056

Subject, 260 a.a., flagellar basal body rod modification protein (RefSeq) from Shewanella loihica PV-4

 Score =  204 bits (519), Expect = 1e-57
 Identities = 109/226 (48%), Positives = 153/226 (67%), Gaps = 4/226 (1%)

Query: 10  SGLSYIDQLKALQEQKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMAS 69
           +G  ++D ++ LQE+    E   Q+ L QEDF SLL++QL+ QDPFKPV NDQMIAQMAS
Sbjct: 37  TGNPFLDSMR-LQEESSIPEAKSQE-LTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMAS 94

Query: 70  FATVDGIGKMNTQFESLNSSMTSNQALQASSLVGRDVLVPGAAG-MKKPDGGMAAMVKLP 128
           F+TVDGI K+N +  +LN+ MTS+QALQAS LVG+ VL+P   G +   D  +  ++  P
Sbjct: 95  FSTVDGITKLNEEIVNLNTVMTSSQALQASGLVGQKVLIPSDTGHISAEDPVLKGVISTP 154

Query: 129 QSIDNLFIRIENEAGQLVRTFDVGAKSSGDNRVEWDGKDQNGNPLPGGKYKVKASGLLDG 188
           + I+++ +RIE+E GQLV+TF V     G+  V WDG D++G P+  G Y +KASG +DG
Sbjct: 155 EPIESITVRIEDEKGQLVKTFTVDGSDGGNIDVSWDGLDKDGEPVASGNYSIKASGKVDG 214

Query: 189 ESKEFEVSTYANVNSVLLGKGDGNVLLNLAGFDAPVRLAEVLEVGK 234
           +S++  VSTYA+V SV LG      +LNL G    ++L +VL V +
Sbjct: 215 KSEDLAVSTYAHVTSVSLGTASTGAILNLRGIGG-IKLGDVLAVSE 259