Pairwise Alignments

Query, 235 a.a., flagellar hook assembly protein FlgD from Vibrio cholerae E7946 ATCC 55056

Subject, 253 a.a., basal-body rod modification protein FlgD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  191 bits (485), Expect = 1e-53
 Identities = 107/228 (46%), Positives = 145/228 (63%), Gaps = 4/228 (1%)

Query: 6   NVGQSGLSYIDQLKALQEQKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVSNDQMIA 65
           +   +G  ++D L+       P+  + Q  L QEDF SLL++QL+ QDPFKPV NDQMIA
Sbjct: 26  STNSTGNPFLDGLRLPSNSAVPEAKSQQ--LTQEDFFSLLSQQLSMQDPFKPVDNDQMIA 83

Query: 66  QMASFATVDGIGKMNTQFESLNSSMTSNQALQASSLVGRDVLVPGAAG-MKKPDGGMAAM 124
           QMASF+TVDGI K+N Q  +LNS MTS+QALQAS LVGR VL+P   G +     G+  +
Sbjct: 84  QMASFSTVDGISKLNDQIVNLNSVMTSSQALQASGLVGRKVLLPTDTGYISAESPGLNGV 143

Query: 125 VKLPQSIDNLFIRIENEAGQLVRTFDVGAKSSGDNRVEWDGKDQNGNPLPGGKYKVKASG 184
           +   + I  + IRIE+E GQ+VRTF V     G+  V+WDG +  G P+  G Y +KASG
Sbjct: 144 ISTSEKIPVINIRIEDEKGQVVRTFTVDGSKGGNTDVKWDGLNDKGEPVAAGNYSIKASG 203

Query: 185 LLDGESKEFEVSTYANVNSVLLGKGDGNVLLNLAGFDAPVRLAEVLEV 232
           L++ +S+   VSTY +V SV LG      +LNL G  A  +L++VL +
Sbjct: 204 LVNDKSQALAVSTYGHVTSVSLGTAATGAILNLKGGMA-FKLSDVLAI 250