Pairwise Alignments

Query, 235 a.a., flagellar hook assembly protein FlgD from Vibrio cholerae E7946 ATCC 55056

Subject, 259 a.a., flagellar basal body rod modification protein (RefSeq) from Shewanella sp. ANA-3

 Score =  191 bits (485), Expect = 1e-53
 Identities = 106/230 (46%), Positives = 147/230 (63%), Gaps = 4/230 (1%)

Query: 6   NVGQSGLSYIDQLKALQEQKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVSNDQMIA 65
           +   +G  ++D L+       P+  + Q  L QEDF SLL++QL+ QDPFKPV NDQMIA
Sbjct: 32  STNSTGNPFLDGLRLPTSSAVPEAKSQQ--LTQEDFFSLLSQQLSMQDPFKPVDNDQMIA 89

Query: 66  QMASFATVDGIGKMNTQFESLNSSMTSNQALQASSLVGRDVLVPGAAG-MKKPDGGMAAM 124
           QMASF+TVDGI K+N Q  +LNS MTS+QALQAS LVGR VL+P   G +     G+  +
Sbjct: 90  QMASFSTVDGISKLNDQIVNLNSVMTSSQALQASGLVGRKVLLPTDTGYISAESPGLNGV 149

Query: 125 VKLPQSIDNLFIRIENEAGQLVRTFDVGAKSSGDNRVEWDGKDQNGNPLPGGKYKVKASG 184
           +   + I  + +RIE++ GQ+VRTF V     G+  V+WDG +  G P+  G Y +KASG
Sbjct: 150 ISTSEKIPVINVRIEDDKGQVVRTFTVDGSKGGNTDVKWDGLNDKGEPVAAGNYSIKASG 209

Query: 185 LLDGESKEFEVSTYANVNSVLLGKGDGNVLLNLAGFDAPVRLAEVLEVGK 234
           L++ +S+   VSTYA+V SV LG      +LNL G  A  +L++VL + +
Sbjct: 210 LVNDKSQALAVSTYAHVTSVSLGTAATGAILNLKGGMA-FKLSDVLAISE 258