Pairwise Alignments

Query, 434 a.a., flagellar hook protein FlgE from Vibrio cholerae E7946 ATCC 55056

Subject, 442 a.a., Flagellar basal body rod protein:Protein of unknown function DUF1078:Flagellar basal body FlaE from Pseudomonas syringae pv. syringae B728a

 Score =  248 bits (634), Expect = 2e-70
 Identities = 162/450 (36%), Positives = 239/450 (53%), Gaps = 33/450 (7%)

Query: 4   VSLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYSTSLF-TNAKTTPGQGVQAAK 62
           + LSGL AA   L+ T NNIAN  T GFK SRAEF D Y+ S+  T+  T+ G GV+ A 
Sbjct: 5   IGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGNTSVGSGVRTAA 64

Query: 63  VAQQFHEGS-SIYTNNPLDLRIAGTGFFAVAKDRLVPQQNELTRNGAFHLDKNSFMVTAN 121
           V+QQF +GS +  T N LDL I G GFF ++ +     +   TR GAFH DK  ++V ++
Sbjct: 65  VSQQFSQGSLTTGTANSLDLAINGDGFFMMSNNG----EKLYTRAGAFHTDKEGYVVNSS 120

Query: 122 DEFLLGYEVNPDTGDVLSYEPKPINIPPQFGKPKQTANIDLGANLPANGDLKDPALFDIT 181
           +  L GY V+ + G V++     + +     +PK T  I   ANL +   L   A FD T
Sbjct: 121 NMKLQGYNVDAN-GAVVTGALSDLRVNASNLEPKATTTITNSANLNSTTALPTVATFDAT 179

Query: 182 DPETYNRTTSSTIYDSMGQPYKLTTYYLKDMNQANTWQTYY-----TVTDKTGEKP---- 232
           D  +YN   S+  YD+ G  + L  Y++K     NTW  Y      +++D T   P    
Sbjct: 180 DTNSYNVKYSTPTYDTQGNAHTLDQYFVK--TGTNTWSMYSLMDGRSISDPTSTTPDKNN 237

Query: 233 ---------INVVGGDAASPTGHVGHTMRFNNDGTLSSLNNGQPIVTEPLGGGANPVDLN 283
                    +   GG   + + ++    +FN DGT + + N  P V    G  A     N
Sbjct: 238 LTFDSSGKLVTTAGGAVPTDSANI----KFNADGTFA-VTNWVPGVQVGTGTAATWA-AN 291

Query: 284 GADVNQTLSFSLDSATQFAAPFELTKFDQDGATTGFLTKIDFDENGSVLATYSNGINTTL 343
           GA    ++   + S TQ A+   L K DQ+G  TG L+ ++ D +G++ ATY+NG +  +
Sbjct: 292 GATGAASIKLDMSSTTQTASVSGLLKQDQNGYATGQLSGMNVDSSGNLFATYTNGKSQVI 351

Query: 344 GRVALVRVANEQGLDKKGGTQWDATQFSGAKIWGESNKGSFGSISNGSLEQSNIDMTQEL 403
           G+ +L   AN QGL + GGT W  T  SG  + G    G+ G I+  +LE+SN+D+T EL
Sbjct: 352 GQTSLTSFANVQGLAQAGGTNWRETFASGVPVSGAPQSGTLGYITGQALEESNVDLTMEL 411

Query: 404 VDLISAQRNFQANSRALEVHNGLQQNILQI 433
           V+LI AQ N+QAN++ +   + + Q  +Q+
Sbjct: 412 VNLIKAQSNYQANAKTISTQSTIMQTTIQM 441