Pairwise Alignments

Query, 434 a.a., flagellar hook protein FlgE from Vibrio cholerae E7946 ATCC 55056

Subject, 582 a.a., Flagellar basal body rod protein:Protein of unknown function DUF1078:Flagellar basal body FlaE from Pseudomonas syringae pv. syringae B728a

 Score =  113 bits (283), Expect = 1e-29
 Identities = 84/286 (29%), Positives = 134/286 (46%), Gaps = 19/286 (6%)

Query: 161 DLGANLPANGDL---KDPALFDITDPETYNRTTSSTIYDSMGQPYKLTTYYLKDMNQANT 217
           D GA+L   GD    +    F+  D  TY+R   + I+DS G  ++L  Y++KD    N+
Sbjct: 300 DAGASLLDPGDTVMHRPVPDFNPADLNTYSRMFGNQIFDSQGNTHELKQYFVKD--GTNS 357

Query: 218 WQTYYTVTDKTGEKPI-------NVV---GGDAASPTGHVGHTMRFNNDGTLSSLNNGQP 267
           W+ +  + D+  +          N+V    G  AS TG  G +   +++G    L    P
Sbjct: 358 WRMHVLIDDRNPQNSASTTPLTANIVFDSHGTVASLTGSPGLS---SSNGNQLKLTGWSP 414

Query: 268 IVTEPLGGGANPVDLNGADVNQT-LSFSLDSATQFAAPFELTKFDQDGATTGFLTKIDFD 326
           ++    G        NGA  +   ++       Q  A    +    DG + G L  +D  
Sbjct: 415 VMAVDPGTSRERWIANGAAGSADGITIDFTHLLQHNAASSRSAAYVDGHSAGELKSLDVG 474

Query: 327 ENGSVLATYSNGINTTLGRVALVRVANEQGLDKKGGTQWDATQFSGAKIWGESNKGSFGS 386
            +G + A ++NG+   +G+V L   AN  GL  +  T+W AT  SG   +     G+ GS
Sbjct: 475 RDGILRAGFTNGMTKDIGQVMLASFANPHGLQPRSDTRWTATADSGVAEYDVPGVGTLGS 534

Query: 387 ISNGSLEQSNIDMTQELVDLISAQRNFQANSRALEVHNGLQQNILQ 432
           I +G+LE SN+ +  EL+ LI AQ  +QANS+A+     L Q ++Q
Sbjct: 535 IVSGALEGSNVVLADELIALIQAQTAYQANSKAISTEVTLMQTLIQ 580



 Score =  113 bits (282), Expect = 2e-29
 Identities = 95/296 (32%), Positives = 141/296 (47%), Gaps = 34/296 (11%)

Query: 5   SLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYSTSLFTNAKTTPGQGVQAAKVA 64
           ++SG+ AA   L    NNIAN  T GFK SRA+F  +Y+++     +   G GV+ A V 
Sbjct: 6   AISGIHAANKRLEVAGNNIANVGTLGFKSSRAQFSALYASAQLGAGQHAVGDGVRLASVQ 65

Query: 65  QQFHEGSSIYTN-NPLDLRIAGTGFFAVAKDRLVPQQNELTRNGAFHLDKNSFMVTANDE 123
           Q F++G ++ ++ N LD+RI G GFF V+    +      TR GAF  D  +F+V ++  
Sbjct: 66  QNFNQGETVISSGNALDMRIQGNGFFVVSDQGSL----AYTRAGAFLKDAANFVVDSDGG 121

Query: 124 FLLGYEVNPDTGDVLSYEPKPINIPPQFGKPKQTA----NIDLGANLPANGDLKDPALFD 179
            L GY  N D G++ S     + I       + T      I+L A+LP+   L     FD
Sbjct: 122 RLQGYAAN-DKGEIASGIRTDLQIDTSNVGARATTTVAETINLDASLPSLARL---PTFD 177

Query: 180 ITDPETYNRTTSSTIYDSMGQP-----YKLTTYYLKDMNQANTWQTYYTVTDKTGEKPIN 234
             DP T+ R  + TI D    P     ++L  Y++K   +AN W  Y  V  +      N
Sbjct: 178 PADPATFTRVATRTIQDVGITPVPAADHELKQYFVK--TEANQWSMYVLVDGR------N 229

Query: 235 VVGGDAASPTGHVGHTMRFNNDGTLSSLNNGQPIV----TE-PLGGGANPVDLNGA 285
            V  D+ +P   +  ++    DG+LS   N Q +     TE  L G      +NGA
Sbjct: 230 PVDPDSVAP---LQVSLELKPDGSLSYSGNDQHLSKVSDTEFALQGWVPATQINGA 282