Pairwise Alignments

Query, 434 a.a., flagellar hook protein FlgE from Vibrio cholerae E7946 ATCC 55056

Subject, 498 a.a., flagella basal body rod domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  137 bits (344), Expect = 1e-36
 Identities = 127/501 (25%), Positives = 205/501 (40%), Gaps = 78/501 (15%)

Query: 3   YVSLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYST-----SLFTNAKTTPGQG 57
           Y   +G+      +N   NN+AN NT GFK+S   + D+ S      S + +  +  G G
Sbjct: 6   YTGATGMRTQAEGMNVVGNNLANVNTIGFKQSMMLYQDLMSQTEPTGSAYVSGISQVGLG 65

Query: 58  VQAAKVAQQFHEGSSIYTNNPLDLRIAGTGFFAVAKDRLVPQQNELTRNGAFHLDKNSFM 117
            +   V     +G+ +  ++  D  I+G GFF V       Q    TR G F  +K+  +
Sbjct: 66  ARVGDVRVLRSQGALLAGSDTTDFAISGKGFFQVTSG----QDTHYTRAGNFRFNKDGQL 121

Query: 118 VTANDEFLLGYEVNPDTGDVLSYEPKPINIPPQFGKPKQ-----TANIDLGANLPANGDL 172
           V  N   L+G+ +  +T   L+      +   +   P +     T+  +LG +  A+   
Sbjct: 122 VDPNGFNLMGHAITGETEGPLAAVTLVKDADGRLSMPAKATGGMTSVFNLGFDKDASSST 181

Query: 173 KDPALFDI-------TDPETYNR---TTSSTIYDSMGQPYKLTTYYLKDMNQANTWQTYY 222
            +P    +       T P   N    T +  +YD+ G  ++LT  +             +
Sbjct: 182 ANPFFGMLEAWDGTATPPLGDNAAGYTQTMRVYDAAGDTHELTIRFDNATTAGGKRYVEF 241

Query: 223 TVTDKTGEKPINVVGGDAASPTGH---VGHTMRFNNDGTLSS-------------LNNGQ 266
            VT   GE      GG AA   G    +  T++F + G L               L N  
Sbjct: 242 LVTMPPGED-----GGAAAGSAGAGLLMSGTLQFGSSGQLQDIMAFTPSGGDPKDLANWV 296

Query: 267 PIVTEPLG----------GGANPVDLN----------------GADVNQTL-------SF 293
           P   +  G          GGA  V L+                G  ++ TL         
Sbjct: 297 PATLDASGRPQFNATFAQGGAQTVGLDLGITTTAWNNAPASAAGVGLDPTLLGGATTPKL 356

Query: 294 SLDSATQFAAPFELTKFDQDGATTGFLTKIDFDENGSVLATYSNGINTTLGRVALVRVAN 353
           +  S T +      T   QDG   G L  ++   +G V   YSNG + +L RV + R  +
Sbjct: 357 AATSTTAYKGSSSSTYMKQDGYAEGVLMNLEVATDGIVSGKYSNGQSQSLFRVPIFRFTS 416

Query: 354 EQGLDKKGGTQWDATQFSGAKIWGESNKGSFGSISNGSLEQSNIDMTQELVDLISAQRNF 413
           E GL  +G   + AT  SGA   G+++  ++G +   SLEQSN+DM +E+V++I  QR F
Sbjct: 417 EDGLRSEGMNHYSATTESGAAQEGKADTENYGKLMGKSLEQSNVDMAREMVNMIVTQRGF 476

Query: 414 QANSRALEVHNGLQQNILQIR 434
           Q NS+ +   + + Q  L+++
Sbjct: 477 QTNSKVVTTADTMIQKALELK 497