Pairwise Alignments

Query, 249 a.a., flagellar basal-body rod protein FlgF from Vibrio cholerae E7946 ATCC 55056

Subject, 238 a.a., flagellar basal body rod protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  106 bits (264), Expect = 5e-28
 Identities = 82/248 (33%), Positives = 122/248 (49%), Gaps = 22/248 (8%)

Query: 1   MDRALFLAMSGAKQNMQAMQLRANNLANVSTTGFRAD-LAQARSMQAYGEGLPSRVFSMT 59
           MD   + A+S      + M + ANN+AN+STTG+RA+ L  +  +QA G G  S   SMT
Sbjct: 1   MDATQYTALSRQNALKREMTVIANNIANISTTGYRAEGLVFSEYVQATGHGQAS--ISMT 58

Query: 60  ERPGH--NFAQGSVITTGRDLDITIQGDGWISVLDKTGKEGLTRNGNLRIDETGLLLNGN 117
           +      N++QG +  TG   D+ I+GDG+  V    G   LTR G    D  GLL+  +
Sbjct: 59  DSGAKITNYSQGMLRQTGGSFDMAIEGDGFFQVAAPEGVR-LTRAGAFEPDANGLLVTPD 117

Query: 118 GHPVLGETGAPITLPVPLNKVEIGGDGTISVRPQGAPADAMEVVDRIKLVRLNDQSLFKD 177
           G+ +L   GAP+ +P     + +  DGT+S    G P      +  I LV   D  L + 
Sbjct: 118 GYQLLDAGGAPVFIPPDARSIAVAADGTLSA--DGRP------LTNIGLVVPEDPLLMER 169

Query: 178 VNGLFRATDPNTQFEADASVKILTGALEGSNVNAIGEMTSLIDLQRQFEMQVKMMSTAEE 237
             G   +  PN       +  +  G +EGSNVN I E+  +I++QR++E      S    
Sbjct: 170 APG--ASFIPNGGVLPAENASVHQGFIEGSNVNPIVEVARMIEVQRRYE------SAKSF 221

Query: 238 MDKASDSL 245
           +DK  D +
Sbjct: 222 IDKEDDRI 229