Pairwise Alignments

Query, 312 a.a., flagellar assembly peptidoglycan hydrolase FlgJ from Vibrio cholerae E7946 ATCC 55056

Subject, 372 a.a., flagellar rod assembly protein/muramidase FlgJ (RefSeq) from Shewanella amazonensis SB2B

 Score =  209 bits (532), Expect = 8e-59
 Identities = 134/350 (38%), Positives = 183/350 (52%), Gaps = 64/350 (18%)

Query: 13  DIAGLDKLRQKAVNGDENAGQSALTAAARQFESIFTSMMLKSMRDANSDFKSDL-MSSQN 71
           DI GLDKLR +A    +   ++AL   A+QFE IF  M++KSMRDAN+ F+SD   +SQ 
Sbjct: 12  DIGGLDKLRAQA----KADNKAALREVAKQFEGIFVQMLMKSMRDANAVFESDSPFNSQY 67

Query: 72  EDLYRQMLDEQMASEFSSSGSLGLADMIVAQ----------------------------- 102
              Y +M D+QMA + S  G LGL D++V Q                             
Sbjct: 68  TKFYEEMRDQQMAVDMSQKGMLGLVDLMVQQLSPKDSPITPSSVLGGDKRFDLGEVPMML 127

Query: 103 --------------LSTGQTASEQKGED--------GFQEA------MRRVEHARKTASE 134
                         + T Q A  Q  E         GF EA            A   A+ 
Sbjct: 128 RRGKDAEAKASLEGIETPQMAERQPVERHSDMSLNMGFHEAPVLDAPTAASAPASSAAAP 187

Query: 135 RSNEDLVAAVYPLRKTQAVQST-QFDSRHSFVTKLKPYADKAARMLGVDSSLLIAQAALE 193
             ++ L     P ++ ++ +    F+SR  F+  L P A +AA+ LG    +LIAQ+ALE
Sbjct: 188 IFDQLLAGKQTPSQQIESERDNPNFESRQDFIRALMPLASEAAKRLGTKPEVLIAQSALE 247

Query: 194 TGWGQKMVKNARGN-SNNLFNIKADRSWQGDKVATQTLEYHNNVPVVEKAAFRSYASFDE 252
           TGWGQK+V+   G+ SNNLFNIKAD+ W+G+K A  TLE+   V V ++A FR Y + ++
Sbjct: 248 TGWGQKLVRRTDGSMSNNLFNIKADKRWEGEKAAVNTLEFEQGVAVRQRADFRVYDTLEQ 307

Query: 253 SFNDYVRFLENNPRYTNALDHGGNSERFIHGIHRAGYATDPQYADKVLRV 302
           SFND+V FL++  RY +AL        F+ G+  AGYATDPQYADKV+RV
Sbjct: 308 SFNDFVDFLKSGERYGDALKQAARPASFVQGLQNAGYATDPQYADKVMRV 357