Pairwise Alignments

Query, 312 a.a., flagellar assembly peptidoglycan hydrolase FlgJ from Vibrio cholerae E7946 ATCC 55056

Subject, 400 a.a., flagellar rod assembly protein/muramidase FlgJ from Pseudomonas aeruginosa PA14

 Score =  154 bits (388), Expect = 4e-42
 Identities = 88/212 (41%), Positives = 119/212 (56%), Gaps = 8/212 (3%)

Query: 99  IVAQLSTGQTASEQKGEDGFQEAMRRVEHARK---TASERSNEDLVAAVYPLRKTQAVQS 155
           IV   S   +  +  G+D +  A      +R+   T    S      A  PL + +++  
Sbjct: 178 IVPSASPAASQMQSLGQDSYLPAQSYPAASRRGFSTDGVDSQGSRRIAQPPLARGKSM-- 235

Query: 156 TQFDSRHSFVTKLKPYADKAARMLGVDSSLLIAQAALETGWGQKMVKNARG-NSNNLFNI 214
             F S   F+  + P A KAA  +GVD+  L+AQAALETGWG+ +++   G +S+NLF I
Sbjct: 236 --FASADEFIATMLPMAQKAAERIGVDARYLVAQAALETGWGKSIIRQQDGGSSHNLFGI 293

Query: 215 KADRSWQGDKVATQTLEYHNNVPVVEKAAFRSYASFDESFNDYVRFLENNPRYTNALDHG 274
           K    W G      T EY     V E AAFRSY+SF++SF+DYV FL+ N RY NALD  
Sbjct: 294 KTGSRWDGASARALTTEYEGGKAVKEVAAFRSYSSFEQSFHDYVSFLQGNDRYQNALDSA 353

Query: 275 GNSERFIHGIHRAGYATDPQYADKVLRVKAQI 306
            N ERF+  + RAGYATDPQYA KV ++  Q+
Sbjct: 354 ANPERFMQELQRAGYATDPQYARKVAQIARQM 385



 Score = 66.6 bits (161), Expect = 9e-16
 Identities = 40/104 (38%), Positives = 63/104 (60%), Gaps = 3/104 (2%)

Query: 17  LDKLRQKAVNGDENAGQSALTAAARQFESIFTSMMLKSMRDANSDF-KSDLMSSQNEDLY 75
           L++L Q  V  D + G++ +   A++FES+F + MLKSMR AN      + M+SQ    Y
Sbjct: 21  LNRLNQLKVGKDRD-GEANIRKVAQEFESLFLNEMLKSMRSANEALGDGNFMNSQTTKQY 79

Query: 76  RQMLDEQMASEFS-SSGSLGLADMIVAQLSTGQTASEQKGEDGF 118
           + M D+Q++   S ++G +GLAD++V QLS  +  S   GE+ F
Sbjct: 80  QDMYDQQLSVSLSKNAGGIGLADVLVRQLSKMKQGSRGNGENPF 123