Pairwise Alignments

Query, 312 a.a., flagellar assembly peptidoglycan hydrolase FlgJ from Vibrio cholerae E7946 ATCC 55056

Subject, 341 a.a., peptidoglycan hydrolase (RefSeq) from Shewanella loihica PV-4

 Score =  233 bits (594), Expect = 5e-66
 Identities = 136/320 (42%), Positives = 182/320 (56%), Gaps = 30/320 (9%)

Query: 13  DIAGLDKLRQKAVNGDENAGQSALTAAARQFESIFTSMMLKSMRDANSDFKSDL-MSSQN 71
           DI GLD LR KA   D+    +AL   A+QFE IF  M++KSMRDAN+ F+SD  M+SQ 
Sbjct: 12  DIGGLDSLRAKAQKDDK----AALKEVAQQFEGIFVQMLMKSMRDANAVFESDSPMNSQY 67

Query: 72  EDLYRQMLDEQMASEFSSSGSLGLADMIVAQLS----------------------TGQTA 109
              Y QM D+QM+   S  G LGLAD++V QLS                      +GQ  
Sbjct: 68  TKFYEQMHDQQMSVNLSDKGMLGLADLMVQQLSPQTSRMTPASVLRGGMVSPVANSGQQV 127

Query: 110 SEQKGEDGFQEAMRRVEHARKTASERSNEDLVAAVYPLRKTQAVQSTQFDSRHSFVTKLK 169
             Q       EA  +V    K      +E +   V P +    + +  F+SR +FV  + 
Sbjct: 128 DRQSLAQS--EAQSKVSSGDKPLPRIFDELVSGKVLPSQAPTGLANKGFESREAFVKAVY 185

Query: 170 PYADKAARMLGVDSSLLIAQAALETGWGQKMVKNARGN-SNNLFNIKADRSWQGDKVATQ 228
           P+A++AA++LG    +LIAQ+ALETGWGQKMV+ A G  SNNLFNIKADR W G++    
Sbjct: 186 PHAEQAAKVLGTSPEVLIAQSALETGWGQKMVRRADGQPSNNLFNIKADRRWDGERAGVS 245

Query: 229 TLEYHNNVPVVEKAAFRSYASFDESFNDYVRFLENNPRYTNALDHGGNSERFIHGIHRAG 288
           TLE+ + V V ++A FR Y    +SF+D+V F+    RY +A+D   N   FI G+  AG
Sbjct: 246 TLEFEHGVAVKQRADFRVYQDIKQSFDDFVSFISEGERYQDAMDKAANPAAFIRGLQDAG 305

Query: 289 YATDPQYADKVLRVKAQIDQ 308
           YATDP YADKV++V   + Q
Sbjct: 306 YATDPDYADKVIKVMQAVTQ 325