Pairwise Alignments

Query, 624 a.a., flagellar hook-associated protein FlgK from Vibrio cholerae E7946 ATCC 55056

Subject, 688 a.a., Flagellar hook-associated protein FlgK from Pseudomonas fluorescens FW300-N2E2

 Score =  208 bits (530), Expect = 5e-58
 Identities = 177/686 (25%), Positives = 302/686 (44%), Gaps = 72/686 (10%)

Query: 5   LLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNAPRQYGGETYGMGVHVENV 64
           LLN+G   +  +Q  L TTG+NI+NV+T GYSRQ  +Q T A  QYG    G G  + +V
Sbjct: 3   LLNIGMSGLSASQTALVTTGNNIANVDTAGYSRQQTVQTTKASNQYGNVFIGSGTTLADV 62

Query: 65  RRSWDQFAVKELNIASTDYAFKRDTEENLDMLSKLLSSVASKKIPENLNEWFDSVKSLAD 124
           RR ++ +   +L   ++  +     +  +  L  LLS  +   +   L ++F SV+++  
Sbjct: 63  RRVYNSYLEAQLKTTTSLNSDAAAYQGQITPLDSLLSD-SGTGLNGALTKFFASVQNVNA 121

Query: 125 SPNDLGARKVVLEKSKLISQNLNDFHETVRLQKDITNKGLALGVERINQLALEIRDLQRL 184
            P D  +R+++L  ++ +S   N     +  Q +  N  L+  V++IN LA  +  L + 
Sbjct: 122 KPGDDASRQLLLSDAQALSNRFNSVASQLTAQNENINGNLSNMVDQINNLATTVAQLNKK 181

Query: 185 MMRVP---GPHNDLMDKHEKLVSELSQYTKVTVTQRKHGEGFNIHIGNGHTLVSGTEASQ 241
           +  V    G  NDL+D   + + +LS +T   V +  +G   +I++G+G  LV G   ++
Sbjct: 182 IAEVSNAGGAPNDLLDARSETIRQLSTFTGTQVVE--NGSSLDIYLGSGQPLVMGNITNK 239

Query: 242 LRVIDGFPDTQQHRLAMVEGKALKAISARDIGGKMEAILDMRDEHIPYLMDEVGRLALSF 301
           L  +    D  +  + +  G ++  ++    GG++  ++  R   +   M+E+GR+AL  
Sbjct: 240 LEAVPDKNDPGRIGIQLNSGSSVMDLTQVLTGGEIGGLMRYRSTVLDPAMNELGRVALVV 299

Query: 302 SHEVNTLQSQGLDLRGNVGSALFTDVNLDVIARSRVVT---NSNSKADMAVFIEDVSQLK 358
           + ++N++Q+ G+D  G  GS LF+ +N       R V    NS    +  V IED  +L 
Sbjct: 300 ADQMNSIQASGIDKNGAFGSNLFSSINSAAQMSQRSVASLGNSAGSGNFNVSIEDTGKLT 359

Query: 359 GGEYSMQYNGSEFVVTLPSGQQTVLPVVKGNV----YVDGLRVEVRN-PPQVGERILVRP 413
             +Y + +  +           T L            VDG  +   N P   G+   + P
Sbjct: 360 TNDYKITFTSATNYTVQRLPDNTSLGAFSTTTTPAPVVDGFSLTFANGPAAAGDSFKITP 419

Query: 414 TRNGAAAIRLATEDATK--IAAQSFEASTTFAQG--------------------KAKFKI 451
           TRN A +I+    D+ +  IAA    A T    G                    +A   I
Sbjct: 420 TRNAAGSIKTEMTDSKRLAIAAPLGAAITPGGSGTLTIPASGQPTMTTKLDIYDEATTSI 479

Query: 452 LQAGDVREFEVIV-------SPTGDQFAVTDTKGNILLQPQPYP---------------- 488
           +Q G      V V         T   + + D +G  +      P                
Sbjct: 480 IQNGIKNSMPVKVVFGATSADGTSQAYQLLDAQGGTISSGTIKPGQSNTLSLSVPLKDAS 539

Query: 489 ------PTGPVTVLGTTFELTEGALPNDKFTANL---VPSEGDNGNLRKMINIQTAKRMN 539
                  + P      TF+++    P+     N+    P   DN N   +  +QTA+ ++
Sbjct: 540 GNPIMDSSVPPVQRTVTFDMSIAGAPSQGAGINISLSQPGSLDNRNGTILAGLQTAQTVD 599

Query: 540 DNES----TIIDLYHNLNTDVGLKMATMTRLTDVARLEKEAAQSRIASISGVNLDEEAAN 595
            N      ++ D Y  L   VG K A     +       + A++   S+SGV+LDEE  N
Sbjct: 600 TNSGSKGISLNDAYGKLVEGVGAKAAQGKLDSAATGAILDNAKNARDSLSGVDLDEETGN 659

Query: 596 MMKFQQAYMASSRIIQASNDTFNTIL 621
           ++KFQQ Y ASS+II+A+ + F+T++
Sbjct: 660 LVKFQQYYTASSQIIKAAQEIFSTLI 685