Pairwise Alignments

Query, 624 a.a., flagellar hook-associated protein FlgK from Vibrio cholerae E7946 ATCC 55056

Subject, 671 a.a., flagellar hook-associated protein FlgK from Pseudomonas stutzeri RCH2

 Score =  276 bits (706), Expect = 2e-78
 Identities = 203/679 (29%), Positives = 337/679 (49%), Gaps = 71/679 (10%)

Query: 3   SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNAPRQYGGETYGMGVHVE 62
           +DLL++G   +  ++ QL+ TGHNI+NVNT GYSRQ   Q T +P+  G    G G  + 
Sbjct: 2   ADLLSIGLSGLAASKTQLSITGHNITNVNTPGYSRQDATQATRSPQFSGAGYIGSGTTLV 61

Query: 63  NVRRSWDQFAVKELNIASTDYAFKRDTEENLDMLSKLLSSVASKKIPENLNEWFDSVKSL 122
            VRRS+ +F   +L  +++  A     +  ++ L  LL+   +   P +L ++F ++++ 
Sbjct: 62  EVRRSYSEFLTSQLRSSTSLSADVEAYKSQINQLDSLLAGTTTGITP-SLQKFFSALQTA 120

Query: 123 ADSPNDLGARKVVLEKSKLISQNLNDFHETVRLQKDITNKGLALGVERINQLALEIRDLQ 182
           A+ P ++ AR++VL +++ +++  N  ++ +  Q + TNK ++   +++N+LA  I  L 
Sbjct: 121 AEDPANIPARQLVLAEAEGLARRFNTVYDRLSEQNNFTNKQMSAVTDQVNRLAGSIGSLN 180

Query: 183 RLMMRVPG---PHNDLMDKHEKLVSELSQYTKVTVTQRKHGEGFNIHIGNGHTLVSGTEA 239
             +          NDL+D  ++ V +LS Y  VTV  +     FNI IG+G  LV G+  
Sbjct: 181 EAIAIAAANGKQPNDLLDARDEAVRQLSGYIGVTVVPQDDSS-FNIFIGSGQPLVVGSTV 239

Query: 240 SQLRVIDGFPDTQQHRLAMVEGKALKAISARDIGGKMEAILDMRDEHIPYLMDEVGRLAL 299
           ++L V+ G  D  +H +  + G + + I+++  GG++  ++  R+E +   M+ +GRLAL
Sbjct: 240 ARLEVVPGQGDPNRHEVQFISGGSRQGITSQITGGELGGLIRYREEVLDSTMNSLGRLAL 299

Query: 300 SFSHEVNTLQSQGLDLRGNVGSALFTDVNLDVIARSRV-VTNSNSKADMAVFIEDVSQLK 358
           + S +VNT   QGLDL+G VGSALF D N   +A+ RV     NS A   + I + SQL 
Sbjct: 300 AVSDQVNTQLGQGLDLKGQVGSALFGDYNDPALAKLRVNAFAGNSSAQPVLNITNTSQLS 359

Query: 359 GGEYSMQYNGSEFVVTLPSGQQTV---------LPVVKGNVYVDGLRVEVRNPPQV-GER 408
             +Y M+Y+GS F +   S  Q +         L +   N    G ++ + NPP   G++
Sbjct: 360 TSDYLMEYDGSSFKIRRLSDNQLMTATENPAGTLSITDKNGRDQGFQIVLGNPPPAPGDK 419

Query: 409 ILVRPTRNGAAAIRLATEDATKIA-AQSFEASTTFAQGKAKFKILQAGDVREFEVIVSPT 467
             ++PTR GA+ I+   + A ++A A    A +T             G + +  ++ +P+
Sbjct: 420 FSLQPTRRGASDIKATLDQADQLAFAAPVRAQSTLQNS-------GTGVIGQPNLLSAPS 472

Query: 468 GDQFAVTDT---------KGNILLQPQPYP----------PTGPVTVLGTTFELTEGALP 508
               A              GN L  P P P            G    L  T  LT G  P
Sbjct: 473 PINAAALSAAFEGLTLSYDGNGLTLPAPAPAGLTLSPSSITAGQTNTLNLT--LTTGTAP 530

Query: 509 N-----DKFTANLVPSEG-------------DNGNLRKMINIQTAKRMNDNESTIIDLYH 550
           N      +FT +  P  G             DN N  K++++QT + +      +     
Sbjct: 531 NVQQYSFEFTVSGRPETGDTFSFNFNQSGVSDNRNALKLVDLQTKQTVGVTPG-VAGSGF 589

Query: 551 NLNTDVGLKMATMTRLTDVARLEKEA-------AQSRIASISGVNLDEEAANMMKFQQAY 603
           +     G  +  +  LT  AR++ EA       A     S+S VNLDEEAAN++KF+Q Y
Sbjct: 590 SFTDGYGELVERVGTLTAQARMDSEATGAILKQATDNRDSLSAVNLDEEAANLIKFEQYY 649

Query: 604 MASSRIIQASNDTFNTILA 622
            AS++IIQ +   F+T+++
Sbjct: 650 NASAQIIQVARSLFDTLIS 668